Query= MSMg01no332_h18.b1 MSMg01no332_h18.b1 CHROMAT_FILE:
MSMg01no332_h18.b1 PHD_FILE: MSMg01no332_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:58 2005
(478 letters)
>mm_chr7_124049327_124050204
Length = 878
Score = 785 bits (406), Expect = 0.0
Identities = 464/486 (95%), Gaps = 11/486 (2%)
Strand = Plus / Minus
Query: 4 aaaaagaaaaagaaaaaga-aaa---aaaga-aaa-agaaaaagaaaaagaaa---aaag 54
||||||||||||||||||| ||| ||||| ||| ||||| ||||| ||||| ||||
Sbjct: 876 aaaaagaaaaagaaaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaag 817
Query: 55 a-aaa-agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 112
| ||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||
Sbjct: 816 agaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaaa 757
Query: 113 agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 697
Query: 173 agaaaaagaaaaagaaagccttgacctttgtcctttcaggttgtccacacaggtctgggc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 agaaaaagaaaaagaaagccttgacctttgtcctttcaggttgtccacacaggtctgggc 637
Query: 233 caaagtgatgcctatcagactgacacaagctactctctgaccttttaaggaaatgttggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 caaagtgatgcctatcagactgacacaagctactctctgaccttttaaggaaatgttggt 577
Query: 293 caggtctttcccaccagaaagcacctgctttttcatctttaatatttgctagatctcact 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caggtctttcccaccagaaagcacctgctttttcatctttaatatttgctagatctcact 517
Query: 353 gtatgatgcatattttatccctcttcatgctttaggagcttgactctaaggattatgaat 412
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtatgatgtatattttatccctcttcatgctttaggagcttgactctaaggattatgaat 457
Query: 413 tacaaacatcacactggatatccttaaaagcttaacatccaacatataatttcatttttc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tacaaacatcacactggatatccttaaaagcttaacatccaacatataatttcatttttc 397
Query: 473 tggtgt 478
||||||
Sbjct: 396 tggtgt 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_h18.g1 MSMg01no332_h18.g1 CHROMAT_FILE:
MSMg01no332_h18.g1 PHD_FILE: MSMg01no332_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:58 2005
(274 letters)
>mm_chr7_123871961_123872634
Length = 674
Score = 518 bits (268), Expect = e-151
Identities = 272/274 (99%), Gaps = 2/274 (0%)
Strand = Plus / Plus
Query: 1 ctaaggctagcttggttggtgctttacagtaagtaagcaggaggagtcttttacctcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaggctagcttggttggtgctttacagtaagtaagcaggaggagtcttttacctcctt 260
Query: 61 tttgctggactcctcttctatctcaaatccttctccacaacacagtttgtgaaacagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgctggactcctcttctatctcaaatccttctccacaacacagtttgtgaaacagatg 320
Query: 121 ggatctgacagtcccgaagcccctgagaaaatcactcccaggcaccttcccacttttcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatctgacagtcccgaagcccctgagaaaatcactcccaggcaccttcccacttttcag 380
Query: 181 agtgttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtcagaatttaaactat 240
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agtgttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--aggtcagaatttaaactat 438
Query: 241 gaggcacaaaacccagggtctgtgacacctgact 274
||||||||||||||||||||||||||||||||||
Sbjct: 439 gaggcacaaaacccagggtctgtgacacctgact 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
