BAC Information

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BAC

Clone NameMSMg01-332J17
Chromosome7 (Build37)
Map Location 136,498,489 - 136,498,863
singlet/doubletsinglet
Overlap genePpapdc1a
Upstream geneRgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
Downstream geneBrwd2, LOC100043150, Fgfr2, LOC546005
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332J17.T7 (MSMg01no332_j17.b1)MSMg01-332J17.TJ (MSMg01no332_j17.g1)
ACCAG448592AG448593
length1,3311,299
length of high quality
(start - end)
186 (134 - 319)375 (415 - 789)
definitionCHROMAT_FILE: MSMg01no332_j17.b1 PHD_FILE: MSMg01no332_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:14 2005CHROMAT_FILE: MSMg01no332_j17.g1 PHD_FILE: MSMg01no332_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGGCGACCCGANGNNNACCAATGGGCGCTAAGACTCACAAGGGAGAGG
ATCCGCGGAATTCCATCTCAACTACAGATCGTCACCGAGCCCCAGAGAGA
GAGAGAGAGAGAAGAGANAGCGATAGAGACAGAGACAGAGACAGAGACAA
AGACAGAGAGAGAGAAACAGAGAGAGAGAGACAGAGAGAGAGACAGAGAG
AGAGAGACAGAGAGAGAGACAGAGACACACAGAGACACACAGAGACACAC
AGAGAGACAGGGACCNAGAAACANAGAGACAGAGANACAGAGGCAGAGAG
AGACGGAGACAGACANCGACANAGAGNNAAAGAGAGACAGGGAGGACGGG
AAGGGNNGAGAGGCNNCNACNAAAAANCCCGGCNNCCAGGGGGGNCCNNN
ANCNAGANAGGCCACCCCTCCTAACCTCCTTAAACTTCCCAAACAACATC
ACCAACCTGGGACCTGAGCCTATGGGGGAGATTTCTTATTTAAATGACCA
CAGGCTCCAACATACAGGCCCAGGCACCCAACTTAGCCATGCCATACAGA
ATGAAGGTCTAATGACAGACACCTTAGGTCTAGTCAATAAAGAAAGCCTT
CTTCTAGCCAGAAGCACCTCTTCCTGTCTTCTGCTCCCTGGCCAAGCTGC
ATATATCACAATCTATCAGTAGTCGACTCTCTGGAGCACATTTGAAACTC
ATACAGAGCAACACTTANATTTTAATTAGTTCCTCTGAGCACCAGATAGA
GTTAAACAAACAGAAAGTCTATATCTTCTCCCATGTGAGTTTACCTTCCA
TTTGGTCACTCTCCTAAGAAGCCACTGGGGTGTTTCTAGTGTAGGGATCT
GAGACACTAACTATCCAGGAAAGGGATTGAGTGTGAGAACAAACACATGC
CCAGAAGGGCAGGAGGACCCCGGCCCCCCCCCAAATGTCCAAGGAGAGAG
GGAGGGAGGGCAAGGCCACGGGGCCTGTGAAAAAAAGGCAAGGGGGGGCC
CCGGGACCCGGGGTGGCTTGGGAAAAAAACAAGGGTTGGAATCCGGGGGG
GCAGCTTGGCAGGGCTAGGGGGGAGGGAAACAAATAAATTAACTAGAAGG
GGGGGGGGGAAAAGGTAATTCCCCTCACGGGGGACCCCCACCAGGGAGCC
AGAAAAAGGGGGGCCAAGGCCGGGGGAGGGACACGGCTNCTTCCTTCCTC
CAAAAAAAAACTTGGGGTACGGCGGGGGGGGGGGCGATCCCCCGGAGGAA
AGAAGGGNAAAAAACTCCCGGGGGCTCGGAACAAACGTGGGCTACACCTT
GGCAANGGAAAAAAGGGGGGAACAGAGCCCG
NCCTTCCCTTTNNNNNACGCATGGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACTAAAGATACTTCNAAGANAN
TGNTTTTGATGGNCAATGCATAAAAAANAAAACCCGGNAANNCCAACANC
NGGANGNGAAAGAGNAACAACCANANNCCNACGGCACAAAGCAGCNANGA
CCCACNAAAGAGAAGNCACCGGNANAAGNNACCCNNCCNGNNGCNANGAN
AAAANANCCGGACAAGAAGCAACNAAAGAAAGGAAGGAAGGGNNGGNNNG
GGCCACAGGNCAAGAANAAAGNCCANCANGGGGGGGAANNCCCAGNAAGG
GGAGCNGGAAACAGCGGGNNCCANGGCANCGCCAGNCAAGAAGCACAGAG
NGAAGAANNCTTATGTTATATTAACTTTCTTCTTATACAGTCCAGGATCC
CAACACAGGGAATGGTGCCACTCATCGGGATGAGTCTTACCTCCTCAATT
AACCTAATAACCCCTCATAGGCATGCCCAGAGGATGGTCTCCCAGATAAT
TCTAGATCTCAAGTTGACAAATGAGACTAACCACCATACCTCTATACCAA
CTACCAACCACAATCCACCATAAACTATAGGCAGCAAAACACTGAGATTA
GAGAAAAATGCTTTACCTTTGAGCCCTCAGGTGATGCAAGATTGTCAGTG
TCGAGGAATACAGCCTGCTAGGATTTATATGGACTTCTTAAAACACACAA
ACAACACATACCCTTCAATTAGCACAGTTACAGAACCAACATCTAGAACT
ATAGGGTAAGAATTTTGTTATGAGGTCACTAAGTCAACAAGTGTTTAGAT
CTTCTAGATTCTTGCCTAGTATGCTTGGTTCTAGGAAACAAATATCAAAC
TTGGTTGGAATTCCAGAAGATTTAGAGACAGAAATCATTATTACATTTGT
CAGAGTATTCATTAAAAACTAAACAGACTCTTATAAGAAAGGATGCTGGG
TGGAAACAAAAAAAACTATCCCTCCTTATATACTTATGAACAAGAAAAGG
CTTTGTACAAGTTACAAAAAGAGTGAACGGAAAGGAATCAAATGGGATTG
TTAAAAGGAAATATGAAAGGGGTTTAAGACCCCCCTTGTGGGCTTGCAAT
TGTGGCCACAACTTTAAAGGTAAAATAGCCTGCAATTATGAAACTCTCCT
TCATCCCCAAAAAACAAAAAAAAAGTGTTTTGTTTTTTGTAGGGACATCC
AAAATACAACTCCCCGAGTAAATTAAAAATCAGGGTTAATTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_j17.g1 MSMg01no332_j17.g1 CHROMAT_FILE:
MSMg01no332_j17.g1 PHD_FILE: MSMg01no332_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:14 2005
         (375 letters)



>mm_chr7_136498115_136498889
          Length = 775

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttatattaactttcttcttatacagtccaggatcccaacacagggaatggtgccactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gttatattaactttcttcttatacagtccaggatcccaacacagggaatggtgccactca 690

                                                                       
Query: 61  tcgggatgagtcttacctcctcaattaacctaataacccctcataggcatgcccagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcgggatgagtcttacctcctcaattaacctaataacccctcataggcatgcccagagga 630

                                                                       
Query: 121 tggtctcccagataattctagatctcaagttgacaaatgagactaaccaccatacctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tggtctcccagataattctagatctcaagttgacaaatgagactaaccaccatacctcta 570

                                                                       
Query: 181 taccaactaccaaccacaatccaccataaactataggcagcaaaacactgagattagaga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 569 taccaactaccaaccacaatccaccataacctataggcagcaaaacactgagattagaga 510

                                                                       
Query: 241 aaaatgctttacctttgagccctcaggtgatgcaagattgtcagtgtcgaggaatacagc 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaaatgtttttcctttgagccctcaggtgatgcaagattgtcagtgtcgaggaatacagc 450

                                                                       
Query: 301 ctgctaggatttatatggacttcttaaaacacacaaacaacacatacccttcaattagca 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgctaggatttatatggacttcataaaacacacaaacaacacatacccttcaattagca 390

                          
Query: 361 cagttacagaaccaa 375
           |||||||||||||||
Sbjct: 389 cagttacagaaccaa 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)