BAC Information

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BAC

Clone NameMSMg01-332J21
Chromosome7 (Build37)
Map Location 29,769,163 - 29,769,727
singlet/doubletsinglet
Overlap geneMap4k1
Upstream geneC130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12
Downstream geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332J21.T7 (MSMg01no332_j21.b1)MSMg01-332J21.TJ (MSMg01no332_j21.g1)
ACCAG448600AG448601
length1,2481,240
length of high quality
(start - end)		543 (97 - 639)725 (88 - 812)
definitionCHROMAT_FILE: MSMg01no332_j21.b1 PHD_FILE: MSMg01no332_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:15 2005CHROMAT_FILE: MSMg01no332_j21.g1 PHD_FILE: MSMg01no332_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCGTTCTTTGNNNNCCACTGGGCGCTATAXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTGTGGAGCGGGTTCTCCCTAACTGATCCACCAAG
GTTAGAAGGACAAGGGGACAGAGCCCTCCTTCCACCACCAGTCCACCTCT
CCTGTCTCTCTCTGTGCTTGTATCCTGGAAGCTGACTTCCCAGTCTACAC
CATACCATCAGCCCATGATGGCCCTGCCCTCCAGCACCTGTGGGTCTTGC
CTGTCTTTTCCTGGGCAATAAACCCCTTCACTTCCATGTCTCTATCTTTG
TCTGGATGTCTATATTTTCTTGCCAAAAATTATTCCTGGGTTGGGGCAGT
TTTGCATTTTCTTTTTTTCTCCTTTTTTGAGATGGGCTTCTCACTACCAC
CCCTGGTGTTGACATTCAAGGCACTTGCTACCATGCCTGGCCTATTTCTG
CATTCTCCAACTCAGATTAGTTGTTCAGATTTTCAGGTAGGCAGTCAGTA
AATTTCTGGGTCTAGCCTGCAGTCCACCTTTCAGGGAAATTTGAGGGTAG
GAGTCCCATAGGCCTGTCATCCCTTCTGAGTCTCTCTCTCTTTCACACAC
ACACACACACACACTTTTTTTTTTTTTTTTTTTTGCTATAGTGAGTTTTG
AACCTAGAGTCTTATGTTTGCTAGGCAACCACTCTGAGCTGTATCCCTAA
CACCTACCTCTTTTTTTTTTTTTAAATTAATGACTTTATTCTTTGAGGGN
TTAATTTAAATTAATTTATCTATTCTTTAAGAATTATAGGTAGACAATGG
TGTTTTTTATTTGGTTTTTTTGGTTTGGGTTTTTTTTTTGAAAAAAGGGT
TCTCTGTATAAACCTGGGTGGCCTGGGAACTCCTTTTTAAACAAGCTGGT
TTCAAACCAAAAAATGCCTGCCCTGCCTTCCAAGCGGGGAAAAAGGGAGG
GCCCCCCCCCCCCCCCCACAAGGATTTTAAAAAATCTTCCTTTCTGGAAA
GGGCCCCGCCCCCTTTTCTATATTTTTGTGGGCGGCCTTGAATGAGACCC
CCGCTAACTTTCTAAAAAACTTCAAATAGAAGCCGGTTTTGCCAGGCACA
CCCCCCTTTCAATGGGGGGATGGTTATTTTTATCCCCCCCCCTTAATTTG
AAAACCCTTTCTGAAAAAGGTGGGGGGAGTNTTTTCNNNAAATCCAAAAA
AAAAAAAAAACCTTNNNNTNCCNTNTTTTTTCTNTACTCTTTNNNNNT

NCCCCGTTCTTNNNNAAGAAGTGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATAAGGAGAGTTTGAGCTTTC
AAGAAGCTAGCTCCAGGCCCTAAGTGGTGGCGTACGCCTTTAATCCCAGC
ACCTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC
TACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAAATATAGAAA
AAATAGTTTCCCGGCTGTGTGCAGTGGTTCCCGTAGACCTGGGTACTCTG
GAGCTGAATGGGGACGGTTGTTTAAAGCCATGAGTTCAGAACCAGCCTGG
ACAGCATAACAAGGCCATGACTCCTTAAATAAAAGAAATTATGGAATGTG
CTTTAATCCTAATATTTGGGAGGCAGAGCCAATATCTGTGAGTTTGAGGA
CAGCTCAGGCTAGCATACAATACAACGCTGTCTCCAAAATAATGATGGTA
ATAAAAATAATAGTGGTAGTGATCATGATCACTGGCAGTTATGAATGCTT
ACTGCTCTTGCAGAGGATCGAGTTTGCTTTCCTGGCCCACATTGGATGGC
TCACAGTGTCTGCACTGTAATTCTAAGTCTAGGGGGATCTATGGCCTCTC
CCAGGATCCTAGGTCCCCTGTACCCATGTGCACTCGCACATACATACACA
TAATTTTATTGTTTTTAAAGATTATTTTATATAAGAGTGCTTTGCTTGCA
CGTAGTGATTTCACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGNGNNCNCNNNTGTNTNTCTGNNNNNNTCTNTNNCCCTGGNNC
TNNNGCTTCCGATGGTTGTGCGCTTTGCCTGCTGCGNCCCCCTCGGCGTC
TTCTGCTCTAGTCNTCTTTGCTTTTCTTTTTGCNTTTTTCTCCGCCCCTC
CTGTTTTTCCCCCNTCTTTTTCGGTCCTTGTNTCCTGTTTCTTGCTTTTC
TCCTGCTCCCCTCTTTTCTTTCCTCCTCTCCCCCTTTTCTTTCTCCCCCT
CCCTCTCTCTTCTTTTTTGCCCCTTTCTTTCTCTCCTTCTCCTCCTCTCT
CTCTCTCTGCTCTTCTGTCCTCTCCTTTTCCTCTTTTCTTCCGGCTGCNT
CTCTCTCCTTCTCCCTCCTCCCCTGNCTCCTTCTCCCTTCCTTCCTCTTT
CGTCTCCTTTCTCTTCCTGCTCTCTTTTTTCTTTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_j21.b1 MSMg01no332_j21.b1 CHROMAT_FILE:
MSMg01no332_j21.b1 PHD_FILE: MSMg01no332_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:15 2005
         (543 letters)



>mm_chr7_29768990_29769932
          Length = 943

 Score =  901 bits (466), Expect = 0.0
 Identities = 528/570 (92%), Gaps = 37/570 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggttagaaggacaaggggacagag-ccctccttccaccaccagtccacctctcctgt 59
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 174 caaggttagaaggacaaggggacagaggccc-ccttccaccaccagtccacctctcctgt 232

                                                                       
Query: 60  ctctctctgtgcttgtatcctggaagctgacttcccagtctacaccataccatcagccc- 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 233 ctctctctgtgcttgtatcctggaagctgacttcccagtctacaccataccatcagcccg 292

                                                                       
Query: 119 --------------------------atgatggccctgccctccagcacctgtgggtctt 152
                                     ||||||||||||||||||||||||||||||||||
Sbjct: 293 tgcacttggctgttgctggggatcccatgatggccctgccctccagcacctgtgggtctt 352

                                                                       
Query: 153 gcctgtcttttcctgggcaataaaccccttcacttccatgtctctatctttgtctggatg 212
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 353 gcctgtcttttcctgggcaataatccccttcacttccatgtctctatctttgtctggatg 412

                                                                       
Query: 213 tctatattttcttgccaaaaattattcctgggttggggcagttttgcattttcttttttt 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tctatattttcttgccaaaaattattcctgggttggggcagttttgcattttcttttttt 472

                                                                       
Query: 273 ctccttttttgagatgggcttctcactaccacccctggtgttgacattcaaggcacttgc 332
           || ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct: 473 cttcttttttgagatgggcttctcactatcacccctggtgttgatattcaaggcatttgc 532

                                                                       
Query: 333 taccatgcctggcctatttctgcattctccaactcagattagttgttcagattttcaggt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taccatgcctggcctatttctgcattctccaactcagattagttgttcagattttcaggt 592

                                                                       
Query: 393 aggcagtcagtaaatttctgggtctagcctgcagtccacctttcagggaaatttgagggt 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aggcagtcagtaaatttctgggtctagcctgcagtccacctttcagggaaatttgagggt 652

                                                                       
Query: 453 aggagtcccataggcctgtcatcccttctgagtctctctctct----ttcacacacacac 508
           |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 653 aggagtcccataggcctgtcatcccttctgagtctctctctctctctttcacacacacac 712

                                         
Query: 509 acacacacactttttttttttttttttttt 538
           ||||||    ||||||||||||||||||||
Sbjct: 713 acacac----tttttttttttttttttttt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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