BAC Information

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BAC

Clone NameMSMg01-332L17
Chromosome7 (Build37)
Map Location 81,395,746 - 81,564,591
singlet/doubletdoublet
Overlap geneLOC546979, Slco3a1, EG665308
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140
Downstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332L17.T7 (MSMg01no332_l17.b1)MSMg01-332L17.TJ (MSMg01no332_l17.g1)
ACCAG448683AG448684
length1,3001,304
length of high quality
(start - end)		621 (131 - 751)680 (133 - 812)
definitionCHROMAT_FILE: MSMg01no332_l17.b1 PHD_FILE: MSMg01no332_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:30 2005CHROMAT_FILE: MSMg01no332_l17.g1 PHD_FILE: MSMg01no332_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,395,746 - 81,396,366)(81,563,912 - 81,564,591)
sequence
NCCCCCGGCCCGTGGNNNAACATTCGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCCGGACATGACCTTACTCTCCCAGCCCCTTTAANNTAGN
TANTGGGNTANATGACCCCTTAAGGACCCCCAAATGTGAGGAGCACATGT
CTATGTGGGCTGGAGCATGAAGGCCTAGGGCAGAGAGGGGAGCCATCCTA
CTCCTGCCCATCTCAGGATGAGATTTCCCCACTCTTGCTCCAGGTCTACT
CCTCATAGCCCCATGCTTCCCCTGGCCCCACAGGGAAGAGTGTCTCAAAG
GCATATCACTAGAACTGTTGTACCTGCTCTGGCTAGCAAGAAAGTTAAGG
TTGTGGGATGGAGATTATGATGGAGGGGCCTGAAAAGAAATTTAAACTTA
GTGTAAATGCCTTCCCCAGGTGTCCCTAGCAACAAACTGGCCATGCAAGG
GTTCATGATCATCCCTATGAATGTGTCCAGTTTTCAGAAAGCCATGCACA
TTGGGGCAGACATTTACCACAACCCGAAGAACATCATTAAGGAGATGGTG
GTGGAGTATGTAAGTGATGAAGGCAGATTTGCACCTAACATCCTGGAGCT
GCTGGAGCTGCTGATGAATACAACTGAGAAGGCTGGGTAACACTAATCAG
GTTGTGCATCAGCATGAATGTTGCTGCCTCTGACTTCTTCAGGACTTCAA
ATCTCCTGCTAACACCGGCAACTCTACTATAGCTGACCAGCTGGCTGAAC
CATGCAAATCCTTCATCTGAGATTATTCAGTGATGGGGACCAAAGGCCCA
TTTGAGCAGGCTGACTGTGAAGTTTGGCAGAAGTTCACAGCTAGTACAGG
CAGCTAGGGGATTGGGAATGCCCTCCTGGTGACCACCCCCAATGGATTGG
TTATGTTGTGGGTCGAACAACAACCCCTGCTCCAAGGGAAAAAAAACACT
CCCTGGGTGAGTGATTAAGGTCTACCAAATGGGCTATATAATGATGGGGG
GCCCGGGGGGCCCCTGATTTTAGGAAAAAAAAAATACTTTTTATCTGGGT
ATTTTCTTTTTTTTAACCAGAAAAAAATATTTTTCCTTTAAATTTATGCT
TTGGAGAAAGAAAAAAATTAATATATAATTTTTATTTTAAAACTTTTGGA
AAAAAAAATAATTTTTTTTTTTGCTCCCTCACAAACTTTTTTTTTTGTTT
TTTTTTTTANAATANAATTAAAATTTAAAATAATTTATAAATTNATATAT
AATATCTTAATTTTTGTGTGTAATACATCAAGAATNCAATTATNTGTTTT


CCGTCTATCTNNNAAAGCATGGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATCAGATCCCGTCTCTGCTTTC
TTGTGCCCTAAATTAGTCTTTTGAGAGCCTCTACATGTACATGGTCTGTT
AGTGGGTACTGCTTAGAGCCAGCAGGTGACATCAAAGCTAGGACTTTAAG
CATGGACAGGAGGTGACCTGACAAAGAAACAGTAGGAGTGGGTGGCTTGC
AATGCAGCCTGTGCTGAGGAAAGCATGGCACTGGGAGGAGCCCAGGGCAG
ACTCAGTTCCAGGACCCAGGGAGGAGTCATGAAACCAAGCTAAGCAGATG
GCAACTCCAAGAAAGCCTTCTCATAGAAGAAAGTCAGAGACATTGGTTGG
CTTGTCAAAGTTCACACACTTCTTAAGGAAAGTCGAAACCAGCACATGGT
CCATGGTTCTTTCAAATATGGAGTAAGATCCAGAGTCCTGAGTGGGCTAA
GGCACCTCAAGGTTTCCTTGGTGTCTCTAAGAGGAACCAGCTGAAGCTGA
ATACACCTTTTTTCTATGGAGGAAAACAGCAGAAGCCTAGTGGCTCTCCG
CATCCTAAATGAATACATTGTACCAAATGACCCTATTTCTAAAGCTAGGA
AATCTGAGAGTCATTGTACCTTTAAAATGCTTTCATTTCTTAGTACTCTC
TACTGGACCTTCTAGAAAGTTCCACTGAAAAGTGCTCAGAAATAGGTTTT
CATAAACTTAACTTTAAAAATCAAACCATAAAGGGAAGAGAGAAATTAGG
CAATTATAACATCAAAAATAATAAAATTAATTAAAATAGCTTTTATTCAC
CTCTTTTTGAAAGTGGCTACAGATTGCTGAGTCCTTACCAATGTTTACCT
TCACCCTGGATAGCTTTTGAGCTCAATCTAAATGAAGGCAGAATCGAGAT
GTCTTTGTCAATGTAGGCACCCTATCCAGAGCCAACGGTAGGGACTAGGT
CTGGAAACCTTCTCCATTCTCTCCCATTTTGGAACCATAAACTTTCTGGG
TCAGCCGCTTCTATTTTAGGGTACCCCTTCTTTTTTGGTGGGCCTATCGG
GAGGTAAAAATCCGGACAAAAAATATCTTGGGGGGGGGGAAAATTACACA
AAAAAAAACAACGATTTGTGGCCCCAACATTTGTTAGGTCTGGGGGGCTT
TTATTTTGGGATCCCCTTGTAAAAATTCTTTTCTGTCAGCTTCTGGAGAT
GGGCCACATAGAAATATAATCCCCAACGTGGTGTCCCCCTTCTTTACTGT
GGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_l17.b1 MSMg01no332_l17.b1 CHROMAT_FILE:
MSMg01no332_l17.b1 PHD_FILE: MSMg01no332_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:30 2005
         (621 letters)



>mm_chr7_81395546_81396566
          Length = 1021

 Score = 1139 bits (589), Expect = 0.0
 Identities = 613/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatgtgaggagcacatgtctatgtgggctggagcatgaaggcctagggcagagagggg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 caaatgtgaggagcacatgtctatgtgggctggggcatgaaggcctagggcagagagggg 260

                                                                       
Query: 61  agccatcctactcctgcccatctcaggatgagatttccccactcttgctccaggtctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccatcctactcctgcccatctcaggatgagatttccccactcttgctccaggtctact 320

                                                                       
Query: 121 cctcatagccccatgcttcccctggccccacagggaagagtgtctcaaaggcatatcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcatagccccatgcttcccctggccccacagggaagagtgtctcaaaggcatatcact 380

                                                                       
Query: 181 agaactgttgtacctgctctggctagcaagaaagttaaggttgtgggatggagattatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaactgttgtacctgctctggctagcaagaaagttaaggttgtgggatggagattatga 440

                                                                       
Query: 241 tggaggggcctgaaaagaaatttaaacttagtgtaaatgccttccccaggtgtccctagc 300
           ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 441 tggaggggcctgaaaagaaatttaaacttagtgtaaatgccatgcccgggtgtccctagc 500

                                                                       
Query: 301 aacaaactggccatgcaagggttcatgatcatccctatgaatgtgtccagttttcagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaaactggccatgcaagggttcatgatcatccctatgaatgtgtccagttttcagaaa 560

                                                                       
Query: 361 gccatgcacattggggcagacatttaccacaacccgaagaacatcattaaggagatggtg 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gccatgcacattggggcagacatttaccacaacctgaagaacatcattaaggagatggtg 620

                                                                       
Query: 421 gtggagtatgtaagtgatgaaggcagatttgcacctaacatcctggagctgctggagctg 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggagaatgtaagtgatgaaggcagatttgcacctaacatcctggagctgctggagctg 680

                                                                       
Query: 481 ctgatgaatacaactgagaaggctgggtaacactaatcaggttgtgcatcagcatgaatg 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgatgaatacagctgagaaggctgggtaacactaatcaggttgtgcatcagcatgaatg 740

                                                                       
Query: 541 ttgctgcctctgacttcttcaggacttcaaatctcctgctaacaccggcaactctactat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 741 ttgctgcctctgacttcttcaggacttcaaatctcctgctaacaccggcaactctactac 800

                                
Query: 601 agctgaccagctggctgaacc 621
           |||||||||||||||||||||
Sbjct: 801 agctgaccagctggctgaacc 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no332_l17.g1 MSMg01no332_l17.g1 CHROMAT_FILE:
MSMg01no332_l17.g1 PHD_FILE: MSMg01no332_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:30 2005
         (680 letters)



>mm_chr7_81563712_81564791
          Length = 1080

 Score = 1299 bits (672), Expect = 0.0
 Identities = 678/680 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgtacatggtctgttagtgggtactgcttagagccagcaggtgacatcaaagctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 acatgtacatggtctgttagtgggtactgcttagagccagcaggtgacatcaaagctagg 821

                                                                       
Query: 61  actttaagcatggacaggaggtgacctgacaaagaaacagtaggagtgggtggcttgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 actttaagcatggacaggaggtgacctgacaaagaaacagtaggagtgggtggcttgcaa 761

                                                                       
Query: 121 tgcagcctgtgctgaggaaagcatggcactgggaggagcccagggcagactcagttccag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 760 tgcagcctgtgctgaggaaagcatggcactgggaggaacccagggcagactcagttccag 701

                                                                       
Query: 181 gacccagggaggagtcatgaaaccaagctaagcagatggcaactccaagaaagccttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gacccagggaggagtcatgaaaccaagctaagcagatggcaactccaagaaagccttctc 641

                                                                       
Query: 241 atagaagaaagtcagagacattggttggcttgtcaaagttcacacacttcttaaggaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atagaagaaagtcagagacattggttggcttgtcaaagttcacacacttcttaaggaaag 581

                                                                       
Query: 301 tcgaaaccagcacatggtccatggttctttcaaatatggagtaagatccagagtcctgag 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcgaaaccagcacacggtccatggttctttcaaatatggagtaagatccagagtcctgag 521

                                                                       
Query: 361 tgggctaaggcacctcaaggtttccttggtgtctctaagaggaaccagctgaagctgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgggctaaggcacctcaaggtttccttggtgtctctaagaggaaccagctgaagctgaat 461

                                                                       
Query: 421 acaccttttttctatggaggaaaacagcagaagcctagtggctctccgcatcctaaatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acaccttttttctatggaggaaaacagcagaagcctagtggctctccgcatcctaaatga 401

                                                                       
Query: 481 atacattgtaccaaatgaccctatttctaaagctaggaaatctgagagtcattgtacctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atacattgtaccaaatgaccctatttctaaagctaggaaatctgagagtcattgtacctt 341

                                                                       
Query: 541 taaaatgctttcatttcttagtactctctactggaccttctagaaagttccactgaaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taaaatgctttcatttcttagtactctctactggaccttctagaaagttccactgaaaag 281

                                                                       
Query: 601 tgctcagaaataggttttcataaacttaactttaaaaatcaaaccataaagggaagagag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgctcagaaataggttttcataaacttaactttaaaaatcaaaccataaagggaagagag 221

                               
Query: 661 aaattaggcaattataacat 680
           ||||||||||||||||||||
Sbjct: 220 aaattaggcaattataacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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