BAC Information

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BAC

Clone NameMSMg01-332L23
Chromosome7 (Build37)
Map Location 134,624,400 - 134,624,830
singlet/doubletsinglet
Overlap geneFbs1
Upstream geneTufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14
Downstream gene1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332L23.T7 (MSMg01no332_l23.b1)MSMg01-332L23.TJ (MSMg01no332_l23.g1)
ACCAG448695AG448696
length1,2321,248
length of high quality
(start - end)		---430 (420 - 849)
definitionCHROMAT_FILE: MSMg01no332_l23.b1 PHD_FILE: MSMg01no332_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:32 2005CHROMAT_FILE: MSMg01no332_l23.g1 PHD_FILE: MSMg01no332_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCCGGCCCTTNNNNNCCATTGCGCCTAACACTCACTAAGGGAGAGGA
CCGCGGAATTCATGAGGAAGNGACGACTACCTAACTCCTANTTNNNANAG
GNANNNGAGNGNACCCCTAAGCACCACCNAAGNCANAGACACAGGANGNC
CACCNGGACGGGCNGGAGCCANNCCGNGGANNGNGAGACGNGNCNCCAGA
AAGCGNNGGNANGGCGGCGCCCAAAACCCNGGCAGCACCGAGAGCCAGGA
GNNAAACCCGGCCCAGNCCCCNGGAGCNGNNNNCGNGNCNGNCNCCANCG
NCNGNCNCNGCNNNCNNNGNAGANGGGCNNCCNNNCCCCGNNAGAGNNCA
NGGGCAGAAAACNAAANAACCANGANAAAGNNCCAAAAGGGCGCNCCAGC
NACCNCCNNCNACAAAGCCCCAGNCCNAAAGAGAACCNGGCNGGCCCAGC
ACCAGNNGGGGGGCGGCCGGGNCGAGCNAACCCGGNCCAGNGNAGGGGGN
NNCCNCCACAGACANAGNNACGGGGAGCNANCCNNACNGGNGAGNNAAGN
GGGCCCAGAGACCAGGAGCCCAGCACACGNCCCNAGANAAGAAAGCAGAG
GNNCCNNNAACCNNGNNNCNACNACANCNGNNNANANNNANCNNAANNNN
NCNGAAGAGNGACNNGAGGCAGGGGAGGGGAGNNGGGNAACNNGGGAGNG
CAGAAGAAGCAGAGACNGGNGNNGGGAAGNNANCCGAANGGGCAGGGCNG
GCCCAGCAACCACAAGGCCCGGGGGCCACAGCNGNGGGGGAAGCAGAGAC
CGGAGCCAAGGANGAGAAGGGACCCGCCACCCCANGCCAGGNCNNNCCNC
CCNAGNNNGCGGCCGNCCAGNNCCCCACAGACAGCAAAACAAAAANACAN
NCCNGGACAACGNAAAGCGAACAAGAAACCCCAAGACCCGCNAGGGAAGG
GGNGACCCCAGGGCCGGCGGGAAAAAAACCNACGGGGCAGCAAACAAAGG
GGGGAAAACCCCGGCGAAGAAAAAAAGCCCCCCGCCAGGGGGGGGGGCCA
AAGAGAAAAGCCCCCAACGGCGGAAAAAAAAAAAAAAAGGGGGGAAAAAA
ACGGGGGAAGGANGGGGNAAGCCAAAAGAAAAAAACGGGGGGGGGGCCCC
CCCCAACAAAAAGGGGAAGGCCCGAGGAAAAAAGAAGGAAAAGGGAAGGA
GGCGGGNNAAAAAAAACAGAGCCCCACCCCCC

NCCGGCCCTTNNNNAAACACAAGTGAGNCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAAACCCCAGGGNTA
CAGAGAAACCCTGTCTTGACCATTAAAAAACCCCACACAAAACAAAACAA
AAAAAAACCCATGTGGGTGGAGGGGTGGCATGTTTGGAGAGCCAGATCAG
CAGTTAAGAGCCCTGGCTGTTCTTGCAGAAGATCCAGGTTCAACTCCTAC
CACCCACATGGAGGCTCACAACTGTCCAGTTCCTGAGGATATGCAGACAT
ACATGCAGACAAAATACCCACACACAAAATTAAAAGCAAAACACAAACCA
AACAAACCCTCAAATCAAACAAAACCAACCAACAACCAAAAAATAAAAAC
AAAACCAAAAAAAATTTTCCCAGGGTCATCAAGATAGCTCAACAGTAAAA
GCACTTGTGACGCCTGATGGCCTGAGTTCCACCCCATGTTAGAAGGAGAA
CTGACCCTTCAAAAACACATGGACACTGTGGCCTCACCTCTCAACCCAAT
ACCTTTTTCTTCTCTCCCTTCCTCCTCAAAACTTAATTCTGGTTCAATAT
GCCCCATGTTCCCATTTAGGAAGGATGTCTATTGTTTGTAGGAGTTGTTC
AAACTGCAGGCTGCTTGCTTAAACCCCCACAATAGTGCCCACCCAACAGC
TCCTGGCCCCACTCACCCTCTCATCCAGATCACTTTCTGCGTCACACTGA
GAAGATAAAGAGAAAGACATCAGGGGATAGGAGAGGGACCCAACAGGGAA
GGGATTCCCCATTACAGGTAGGTGACACTTACTATATATCCAGCTTCCAG
AGAGTGACGGGAGAAGGCCTGAGAAAGACCAGAGTCCAGAAATAAGGGAG
GCTGACTTGACCAGCAACTGTTACAAGCCACTATTCCCAGCAAGACCTTC
AAGAGGACTTAAAAGCTACTCTCCATCATGCCTCTTGTTTCCCTGGTTAC
TTCCACCTCCGCTAACAACCCAGCTTAACTATTTTCCTAAAAACCCAAGG
TTTTCAAAACCTTAAAACTGTATTCAAAAAAAACTTTTCCTCCCTTTTTT
TCCTCAAAAAAATTTTGAAAAACCTGGGGCCCCAAAAGATTTTAAGGGGT
TTTTCTTTAAAGGAAACCTCTTGCCTATCTCCCAAAAAAAAAGAAGGGGT
TCCCTTCTGTGGGTTTCTTTAACACTTTTCCCATAATCCCTCCCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_l23.g1 MSMg01no332_l23.g1 CHROMAT_FILE:
MSMg01no332_l23.g1 PHD_FILE: MSMg01no332_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:32 2005
         (430 letters)



>mm_chr7_134624112_134624941
          Length = 830

 Score =  795 bits (411), Expect = 0.0
 Identities = 426/431 (98%), Gaps = 1/431 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagggtcatcaagatagctcaaca-gtaaaagcacttgtgacgcctgatggcctgagtt 59
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 719 ccagggtcatcaagatagctcaacaggtaaaagcacttgtgacgcctgatggcctgagtt 660

                                                                       
Query: 60  ccaccccatgttagaaggagaactgacccttcaaaaacacatggacactgtggcctcacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ccaccccatgttagaaggagaactgacccttcaaaaacacatggacactgtggcctcacc 600

                                                                       
Query: 120 tctcaacccaatacctttttcttctctcccttcctcctcaaaacttaattctggttcaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tctcaacccaatacctttttcttctctcccttcctcctcaaaacttaattctggttcaat 540

                                                                       
Query: 180 atgccccatgttcccatttaggaaggatgtctattgtttgtaggagttgttcaaactgca 239
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 539 atgccccatgttcccatttaggaaggatgtctattgtttgtgggagttgttcaaactgca 480

                                                                       
Query: 240 ggctgcttgcttaaacccccacaatagtgcccacccaacagctcctggccccactcaccc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggctgcttgcttaaacccccacaatagtgcccacccaacagctcctggccccactcaccc 420

                                                                       
Query: 300 tctcatccagatcactttctgcgtcacactgagaagataaagagaaagacatcaggggat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tctcatccagatcactttctgcgtcacactgagaagataaagagaaagacatcaggggat 360

                                                                       
Query: 360 aggagagggacccaacagggaagggattccccattacaggtaggtgacacttactatata 419
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 359 aggagagggacccaacagggaagggatgggccattacaggtaggtgacacttactatata 300

                      
Query: 420 tccagcttcca 430
           |||||||||||
Sbjct: 299 tccagcttcca 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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