BAC Information

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BAC

Clone NameMSMg01-334C15
Chromosome7 (Build37)
Map Location 57,042,855 - 57,043,246
singlet/doubletsinglet
Overlap genePrmt3
Upstream geneZdhhc13, Csrp3, E2f8, LOC100040465, 9130015G15Rik, 5330421F07Rik, Dbx1, Htatip2
Downstream geneSlc6a5, Nell1, 4933405O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334C15.T7 (MSMg01no334_c15.b1)MSMg01-334C15.TJ (MSMg01no334_c15.g1)
ACCAG449729AG449730
length836786
length of high quality
(start - end)
64 (120 - 183)393 (122 - 514)
definitionCHROMAT_FILE: MSMg01no334_c15.b1 PHD_FILE: MSMg01no334_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:30 2005CHROMAT_FILE: MSMg01no334_c15.g1 PHD_FILE: MSMg01no334_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGCAGTCCGCGGAA
TCTACGAATTTCTTAAAATTAAGGTTGGGGGTGGGGTGGGAGTGTGACAA
GGGAAGACTCATTCACCCTTCCTCTGACCTTGGGGACATTTTAAATTTTA
TTGTTTAATGCTCGACTTTAAAATTCTGTGTGCTCCATTCTACCTTGGCA
AATCTACTTCAAAGCAAAAAGTCCACTTTGTGGAATCGAATGTTAGTTTG
CTGCTTCGATCTGTTGTCCCTAACCGAGCGTTTTATGATACACGCTAAAA
ATTTTTTTTTCTTTTTCCCCTTTGCTACATATTTTATATCTCCTTCTTTT
TTTATCCCCCCCTCTTCCCCATTACTTTTTTATTTTCCTTTTTCTTCTAC
TTACCTCTTGCCCATTTCACTCTTTTTTTTTTATAACCCCTTTTCCCCTC
CTCTTATATTAATTAACTATTCTCCTTTCTCTATCTTTTCTCACCCTTAG
ATATTAATTTCTTCACATTCATAAATTCTTCGATATTTCTGTTATATATA
TCTTATCTCTCTCCCTTTTTATTTTATCTCTTCTCCTCCTTGATTATTCC
TCTATATTTCTCTTCGTTACTTTCACTATTTATATTTTAACTAATATAAC
TATTTTTCTCACTCTATATTTTTTCTTAATTAACACTCACCAATATATTA
TCACTCTAAACTCCATACTTCACACAATATTTATTTATTACCTTCTATTA
TATCATCACCTCTCACATCCTCTCTATTTATCTTCTTCGCTTCCTTCTCC
TCTCCATCCTGTTTTTTACTCCCCTACATAATCACN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCAGAAATTCCTTCTCTATGGACATGACCACTATGACTAT
TAAAACTGAACAGATTCACGTATCAGGTCTGACCACATTTGGAAACATTT
CTATATTATCAATGATTTTGTGGGTTTTAAGTCATGACACAAATCCTGTG
AAAACTGTTTTAAATTAAACTTTGTAATTTTGTAATTGTAAACTTTGTGC
AAACCAAGTCAGCATTGCTATTTTAAAAACTAAAATAGTTTCTTTTCCAT
TAAAGAAACTAGGCCTGTTTTTTAATCACTACTTAACATGGTAGATGTTC
CAGGGAAGACCTGAGCCATCAAGCAGTTGTTTTTTCCAGTGCTCAATTTC
AAGGAAAAAGTGGCTTGATAAGACAGATTAATACTGATGTAAATAGGATT
TACAGGGCCTTGACACCTCTGTAATCTTCTCATCTTGGGAGCGTGGGAGC
ATATGTGTGTGTGTTCGTTCATACTATCACTCTTTCACACCCTACTCCCC
TCTAATTTCTATTATTTAATTATATTGTCTCTTGTACCATCCTCCACTTT
TGTCAAAATACCATCCACTAACATTGTCTATTGTCCTTACCATTTCCCAT
TTTCTTCTCCCGTTTAATCCTATTTCTTTTTCTCAAACCCATCCCATATC
TTTAAGTTCTCCCCCTCATTTCTTTCCATTTTCGATTCCCGCTTATTGTT
TTCGTTCTTTAATTACACCATCTTACCATTACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_c15.g1 MSMg01no334_c15.g1 CHROMAT_FILE:
MSMg01no334_c15.g1 PHD_FILE: MSMg01no334_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:30 2005
         (393 letters)



>mm_chr7_57042655_57043447
          Length = 793

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaggtctgaccacatttggaaacatttctatattatcaatgattttgtgggttttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atcaggtctgaccacatttggaaacatttctatattatcaatgattttgtgggttttaag 533

                                                                       
Query: 61  tcatgacacaaatcctgtgaaaactgttttaaattaaactttgtaattttgtaattgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcatgacacaaatcctgtgaaaactgttttaaattaaactttgtaattttgtaattgtaa 473

                                                                       
Query: 121 actttgtgcaaaccaagtcagcattgctattttaaaaactaaaatagtttcttttccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actttgtgcaaaccaagtcagcattgctattttaaaaactaaaatagtttcttttccatt 413

                                                                       
Query: 181 aaagaaactaggcctgttttttaatcactacttaacatggtagatgttccagggaagacc 240
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaagaaactaggcctgtcatttaatcactacttaacatggtagatgttccagggaagacc 353

                                                                       
Query: 241 tgagccatcaagcagttgttttttccagtgctcaatttcaaggaaaaagtggcttgataa 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agagccatcaagcagttgttttttccagtgctcaatttcaaggaaaaagtggcttgataa 293

                                                                       
Query: 301 gacagattaatactgatgtaaataggatttacagggccttgacacctctgtaatcttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gacagattaatactgatgtaaataggatttacagggccttgacacctctgtaatcttctc 233

                                           
Query: 361 atcttgggagcgtgggagcatatgtgtgtgtg 392
           ||||||||||||||||||||||||||||||||
Sbjct: 232 atcttgggagcgtgggagcatatgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)