BAC Information

Click to search

BAC

Clone NameMSMg01-334O15
Chromosome7 (Build37)
Map Location 97,717,904 - 97,718,512
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik
Downstream geneLOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334O15.T7 (MSMg01no334_o15.b1)MSMg01-334O15.TJ (MSMg01no334_o15.g1)
ACCAG450293AG450294
length744738
length of high quality
(start - end)
692 (49 - 740)609 (74 - 682)
definitionCHROMAT_FILE: MSMg01no334_o15.b1 PHD_FILE: MSMg01no334_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:30 2005CHROMAT_FILE: MSMg01no334_o15.g1 PHD_FILE: MSMg01no334_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAACGCGG
AATTCTCCCCTGAGTATCCCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCTCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GTATACCCAAGATATAAGATACAATTTCCTTAACACATGAAACTCATAAA
AAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTGGAGTTGGGGATTGCCGTAAACCA
ATGAGTCTAGGAAAAGATGTGAGGAGGGGTAGACCTCCACTGAAGATGAG
AGTTGGGAGGAGGGGAGGACACACGTGGTTCATTGACGAGCTAAGGGCGA
TACGGGGACATGGAATTTGGAGGAGCTGAGGGATCCCTGGAGATTTGCTA
TTAGCCTATTTATTTCCCTGGTTGGAGTGTGTTTAAATATTTAATGATAA
AATTAAAACATATATCAATACTATCTTCAGTGTTAACATTCTGACATAAA
CAAATGCACTGGTTTTCCCTGTCCTACTCTTTCTCCTTTCTGCTATTGGT
GTAACGGAAGCTGTGTTTTGGGGTGGAACCTTGCAGTTATGGATATAGCT
GTTTAAATAGAATTGCTCCAACAGCTGCTGATCTTTCCTCCTGGGAGGAA
ACAGAAACAAAGTCCTCTAATGTAAATAAGGAGAATAGAACAAAAGAGAT
GAAGTGTCCATGTCCTTATACCTCTGAATACAAGCAGATATTTCTAGGGG
GAAGATCACACAAATGTCTCCTGGTTTACAGTGCCTGAAAAGTTTGTTTC
TTCCTGCTGTGAAATGTACCTGCTCGGCTAGAAACATTAATTTCTTCCCA
TTCTAAAAACACTATTCGCTCATTTACCTTCCAAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_o15.g1 MSMg01no334_o15.g1 CHROMAT_FILE:
MSMg01no334_o15.g1 PHD_FILE: MSMg01no334_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:30 2005
         (609 letters)



>mm_chr7_97717704_97718712
          Length = 1009

 Score = 1162 bits (601), Expect = 0.0
 Identities = 607/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggagttggggattgccgtaaaccaatgagtctaggaaaagatgtgaggaggggtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggagttggggattgccgtaaaccaatgagtctaggaaaagatgtgaggaggggtaga 260

                                                                       
Query: 61  cctccactgaagatgagagttgggaggaggggaggacacacgtggttcattgacgagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccactgaagatgagagttgggaggaggggaggacacacgtggttcattgacgagcta 320

                                                                       
Query: 121 agggcgatacggggacatggaatttggaggagctgagggatccctggagatttgctatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcgatacggggacatggaatttggaggagctgagggatccctggagatttgctatta 380

                                                                       
Query: 181 gcctatttatttccctggttggagtgtgtttaaatatttaatgataaaattaaaacatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctatttatttccctggttggagtgtgtttaaatatttaatgataaaattaaaacatat 440

                                                                       
Query: 241 atcaatactatcttcagtgttaacattctgacataaacaaatgcactggttttccctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaatactatcttcagtgttaacattctgacataaacaaatgcactggttttccctgtc 500

                                                                       
Query: 301 ctactctttctcctttctgctattggtgtaacggaagctgtgttttggggtggaaccttg 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctactctttctcctttctgctattggtgtaacggaagctgtgctttggggtggaaccttg 560

                                                                       
Query: 361 cagttatggatatagctgtttaaatagaattgctccaacagctgctgatctttcctcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagttatggatatagctgtttaaatagaattgctccaacagctgctgatctttcctcctg 620

                                                                       
Query: 421 ggaggaaacagaaacaaagtcctctaatgtaaataaggagaatagaacaaaagagatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggaaacagaaacaaagtcctctaatgtaaataaggagaatagaacaaaagagatgaa 680

                                                                       
Query: 481 gtgtccatgtccttatacctctgaatacaagcagatatttctagggggaagatcacacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtccatgtccttatacctctgaatacaagcagatatttctagggggaagatcacacaa 740

                                                                       
Query: 541 atgtctcctggtttacagtgcctgaaaagtttgtttcttcctgctgtgaaatgtacctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtctcctggtttacagtgcctgaaaagtttgtttcttcctgctgtgaaatgtacctgc 800

                    
Query: 601 tcggctaga 609
           || ||||||
Sbjct: 801 tcagctaga 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)