BAC Information

Click to search

BAC

Clone NameMSMg01-335D07
Chromosome7 (Build37)
Map Location 46,740,275 - 46,740,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik
Downstream geneLOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335D07.T7 (MSMg01no335_d07.b1)MSMg01-335D07.TJ (MSMg01no335_d07.g1)
ACCAG450515AG450516
length712736
length of high quality
(start - end)		649 (34 - 682)560 (77 - 636)
definitionCHROMAT_FILE: MSMg01no335_d07.b1 PHD_FILE: MSMg01no335_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:53 2005CHROMAT_FILE: MSMg01no335_d07.g1 PHD_FILE: MSMg01no335_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCATAAGC
CTAACGTGTATGTAAGTTAACAAGATCTTCTATTCCCACCCAGCCCCTCC
TGCACTAGCCAAGCCAGACTATCATTAAGGAGTTTTTTTTCTCTCATTTT
TCCTGATGTCAGGAGTGCATTCTCACTGGGCTGGGAAAGGGGGCATATTT
CTGCATCAGTTCTACACATAGATACTCCAGTAAATAAAAATATGAAAACA
AAAACTCCATATGGCAGGGATAGTGCTTCATGTCTGTAATTCTGGAATAG
AGAAAACTGGAAGCCAGCTTGAACTATGGACTGTGTATTGATCACTAAGG
GTTGCATACCAAGAATTTATCATAATCTCCCACAAAGGGGAAGAAAAGCA
CTAGAAAAGCTGAAGGTACATGGTGATAAACTACTACATTGAATTTCAGC
TGAGAGTGAGACAGGGGGATCACTTGTACCTAGAAGTCAGAGGCCAGCCT
TGGGAACAGAAAGAGACCCGCTCTCAATAAACAAACAGCTGGCAGACAGC
TGGGCATTATGGCACACACTTTTAATCCCAGCACTCTGGAGGAAGAGGCA
GATAGATCTCTGTGTGTTTGAGACCAGTCTGGTCTGGTCTACAGTGTGTT
CAGGACAGTAAGGGTTATGCAATGGGAGATCCTGTCTCANATAACAAATA
ACTACAACTACA

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTTAATTCCACTTTTGAGTGA
GACTCCACATCCTCCCTTGGGTCCTTCTTATTTCCAAGTTTCTCTGGTTC
TGTGGATTTCAGCATGATTATCCTGTACTTTGTGGCTAATATTTACTTAG
AAGTGATACCATGTGTATCTTTCTGTCTCTGGGTTACCTCATTCAAGATG
GAAGTTCCTAGTTCTATCCATTTACCTGCAACTTTCATGATGTCTTTGTT
TTTAATAGCTGAGTAGAAATTCATTTTTTAAATTTACCCCATTTTCTCTA
TTCATTCTTCATTTGATGGACATCTAGGTCGTTCCCAGTGTCTGGATATT
ATGAGTAATGTTGCTACGAGCATAGGAGAGCAAGTGTCCATGTGATATGG
AGCATCTGTTGGGTATATTCCCAGGAGTAGTATATTTGGGTCTTGAGGTT
AGAACTCTTCCCAATTTTCTGAGAAACCACCAAATTAATTTCCCAAGTGT
TTGTACTAGTATCCACTCTCACCAGCAATGAACGAGTGTTCCCCTTGTTC
TACGCCCTCAACATCATGCGTTGTCACTTGAGTCAGAGTGGTTTTGATTT
GCAGCTGATGACTAAGGACATTGAAAGTTTCTTTAAGTGCTTCTTGGCCT
TTAGGATTTCTTTGTTGAGAACCCTATAGAATGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_d07.b1 MSMg01no335_d07.b1 CHROMAT_FILE:
MSMg01no335_d07.b1 PHD_FILE: MSMg01no335_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:53 2005
         (649 letters)



>mm_chr7_46740275_46741323
          Length = 1049

 Score = 1168 bits (604), Expect = 0.0
 Identities = 607/608 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcataagcctaacgtgtatgtaagttaacaagatcttctattcccacccagcccct 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaattcataagcctaatgtgtatgtaagttaacaagatcttctattcccacccagcccct 549

                                                                       
Query: 66  cctgcactagccaagccagactatcattaaggagttttttttctctcatttttcctgatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cctgcactagccaagccagactatcattaaggagttttttttctctcatttttcctgatg 489

                                                                       
Query: 126 tcaggagtgcattctcactgggctgggaaagggggcatatttctgcatcagttctacaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcaggagtgcattctcactgggctgggaaagggggcatatttctgcatcagttctacaca 429

                                                                       
Query: 186 tagatactccagtaaataaaaatatgaaaacaaaaactccatatggcagggatagtgctt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tagatactccagtaaataaaaatatgaaaacaaaaactccatatggcagggatagtgctt 369

                                                                       
Query: 246 catgtctgtaattctggaatagagaaaactggaagccagcttgaactatggactgtgtat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catgtctgtaattctggaatagagaaaactggaagccagcttgaactatggactgtgtat 309

                                                                       
Query: 306 tgatcactaagggttgcataccaagaatttatcataatctcccacaaaggggaagaaaag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgatcactaagggttgcataccaagaatttatcataatctcccacaaaggggaagaaaag 249

                                                                       
Query: 366 cactagaaaagctgaaggtacatggtgataaactactacattgaatttcagctgagagtg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cactagaaaagctgaaggtacatggtgataaactactacattgaatttcagctgagagtg 189

                                                                       
Query: 426 agacagggggatcacttgtacctagaagtcagaggccagccttgggaacagaaagagacc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agacagggggatcacttgtacctagaagtcagaggccagccttgggaacagaaagagacc 129

                                                                       
Query: 486 cgctctcaataaacaaacagctggcagacagctgggcattatggcacacacttttaatcc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cgctctcaataaacaaacagctggcagacagctgggcattatggcacacacttttaatcc 69

                                                                       
Query: 546 cagcactctggaggaagaggcagatagatctctgtgtgtttgagaccagtctggtctggt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cagcactctggaggaagaggcagatagatctctgtgtgtttgagaccagtctggtctggt 9

                   
Query: 606 ctacagtg 613
           ||||||||
Sbjct: 8   ctacagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |