BAC Information

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BAC

Clone NameMSMg01-335J01
Chromosome7 (Build37)
Map Location 81,418,504 - 81,418,883
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979
Downstream geneSlco3a1, EG665308, EG665641, 0610006L08Rik, Sv2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335J01.T7 (MSMg01no335_j01.b1)MSMg01-335J01.TJ (MSMg01no335_j01.g1)
ACCAG450791AG450792
length726823
length of high quality
(start - end)
387 (58 - 444)178 (76 - 253)
definitionCHROMAT_FILE: MSMg01no335_j01.b1 PHD_FILE: MSMg01no335_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:22 2005CHROMAT_FILE: MSMg01no335_j01.g1 PHD_FILE: MSMg01no335_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAGAT
TCCCCAGAATGAACCTGCTTTGAATCTAGTTGAATGAAACGCTACGTGTG
TGACTAGCACACAAGAGACTGGGGCAAAGGTGAAATTGAACCTCATGATG
GATGAATGTATATTTGGTTCTAGACCACAGTCACCCATTCTGATAGGACA
TGCAGAAGATCTTTGGGGTCTGCCATCTCTCTTCTCTGAATAATTTGGAC
AACCCCTGTGACTGGACAACCCCTGTGACTAGATCTCTTGTGGATTGTTA
ACTTGTTTAGTGTTAGTTAGTATCCTGACTACAAATAAAAAACAGTGGTT
TAAAAGATTAAATGAAGGGTAGGAAATTCTTTCTGTAAGTTCCCAAGAGT
ACCACCAAAACAATAACATCAAAACCCCAATAAACAAATGAACCAAACAG
TAACACCCTGTGGGACCACATGTGCTGACACCTCAAGGAACAGCTAGCTC
TCTGACTTCTTCTGCATCCACTGACTTTCCAGAGGTGAAACCAGCTTCCT
TATGAAGGAAACACTATTTATTTTTTCAGCTGATTTTGCATCTTTTTCTG
TCCGGAAAGAGGCTGCTGTAATCGCCTTTTTTTGTTTTTTTTATGCCCGC
ATTATTCCACCATGTTGCCTCTTTTAGATACTTTACTTTCTCTCTACTTC
CCTCGCCTTCTTTCTTTTACAACTAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTGGATGGTTTTAGCTCCCTTGT
CAAACATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATT
CTGTTCCATCTGCTAAATGCATGAAACTCAAGAAGAACAAAGACCAAAGT
GTGGACATTTTGCCCCTTCTTAGAACTGGGAACAAACNACCCATGGAAGG
AGTACGAAAGACAAAGTTTGGAGCTGGAAGAGNNNGAGACACCATCCAAA
ACACCTGCGATACGTGGGAACTTTTTTTTATAATCAGCTTTCAAACGTGC
ATTTATANNNTCCCCTTTTATCAAATTTTTTGCTGAAAAAAACCAANAAT
ATACCTTGCTCCTTGTTGAAAATATTGCCGGGGCCCTAACTAAACCATAA
AATGGATGGTCTCACCCCCCCCTTATTGGATGGATTCCCAAAACCCCCCT
AGAGCAAATTCTATATTACCCTCCCCACCCCCTTTTAGTTACCTTTTTCC
CCCCCCACACGGAGAAGGAGAGGGCGGACNATAACACCTGTTTATCCCCC
CGGGCCTTTCTNNTNTNNTTTTNNTTTTTTTTTCNNTTATATTTTTTCAT
GTTTTTTCTTCCCTTCTTATTAAATACCCCCCTTTTTCTTTTCTTCCCAC
TTCTTTTTTTTCAGTTTCGTGCNTNTTTCCAGAGTCTTTCTTCTTTTCTC
CCCCCCCCCCTTTTTTTTCTCCCTTATTATCTCCTCTATTCTTTCATTTT
TTCTCCCATATTATAATATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_j01.b1 MSMg01no335_j01.b1 CHROMAT_FILE:
MSMg01no335_j01.b1 PHD_FILE: MSMg01no335_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:22 2005
         (387 letters)



>mm_chr7_81418304_81419083
          Length = 780

 Score =  690 bits (357), Expect = 0.0
 Identities = 377/387 (97%), Gaps = 7/387 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaacctgctttgaatctagttgaatgaaacgctacgtgtgtgactagcacacaagag 60
           ||||||||||||||||||||||||||||||||||    |   ||||||||||||||||||
Sbjct: 201 aatgaacctgctttgaatctagttgaatgaaacg----g---gtgactagcacacaagag 253

                                                                       
Query: 61  actggggcaaaggtgaaattgaacctcatgatggatgaatgtatatttggttctagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 actggggcaaaggtgaaattgaacctcatgatggatgaatgtatatttggttctagacca 313

                                                                       
Query: 121 cagtcacccattctgataggacatgcagaagatctttggggtctgccatctctcttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagtcacccattctgataggacatgcagaagatctttggggtctgccatctctcttctct 373

                                                                       
Query: 181 gaataatttggacaacccctgtgactggacaacccctgtgactagatctcttgtggattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaataatttggacaacccctgtgactggacaacccctgtgactagatctcttgtggattg 433

                                                                       
Query: 241 ttaacttgtttagtgttagttagtatcctgactacaaataaaaaacagtggtttaaaaga 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttaacttgcaaagtgttagttagtatcctgactacaaataaaaaacagtggtttaaaaga 493

                                                                       
Query: 301 ttaaatgaagggtaggaaattctttctgtaagttcccaagagtaccaccaaaacaataac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttaaatgaagggtaggaaattctttctgtaagttcccaagagtaccaccaaaacaataac 553

                                      
Query: 361 atcaaaaccccaataaacaaatgaacc 387
           |||||||||||||||||||||||||||
Sbjct: 554 atcaaaaccccaataaacaaatgaacc 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 780
Length adjustment: 9
Effective length of query: 378
Effective length of database: 771
Effective search space:   291438
Effective search space used:   291438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)