BAC Information

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BAC

Clone NameMSMg01-335M17
Chromosome7 (Build37)
Map Location 144,081,251 - 144,258,331
singlet/doubletdoublet
Overlap geneMgmt
Upstream geneLOC668764, LOC546009, EG621677, EG668771
Downstream geneEG621804, Ebf3, 9430038I01Rik, Txnl2, LOC435235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335M17.T7 (MSMg01no335_m17.b1)MSMg01-335M17.TJ (MSMg01no335_m17.g1)
ACCAG450967AG450968
length730745
length of high quality
(start - end)
394 (63 - 456)467 (80 - 546)
definitionCHROMAT_FILE: MSMg01no335_m17.b1 PHD_FILE: MSMg01no335_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:40 2005CHROMAT_FILE: MSMg01no335_m17.g1 PHD_FILE: MSMg01no335_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,081,251 - 144,081,644)(144,257,865 - 144,258,331)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCCAGATCCGCGGAATTCTTTACTTT
TTTCGGCTTAAACCTTGGTCAGAGAAATGTGCCTTCTTCCACCTGCCTCT
CAGTTCCTGATCCTGAACAGTCCTTACCTCCTTCCCAGCAAGAAGAGTTA
CTGCATGGTCTTAGACCTGCTCTGAGCGACAGCACTGTTCTCAGTTTGCC
CTGCTCACCCTTTTCAACCCCATATAATCGACTTTGGGGGCACTGGCCTT
CATAGAGACTTTTCCATGCCAAATTAGGAAGGGTAGAGATTCAGATGTCA
GGACCTTTCTCATTTCCATCTTCCTCCCCAACCCTAATAACTCTCAGATA
TGTTTTGAAATTGGAAATGTCCCCACAGACTTATTCACTAGGTGTTGATT
GTCAGCTGATGGGCCTTTGAGAAGTGATTGGATTCTGAGGGCTCTGACCT
AATCAGTGAAGTAATCTCTTGATAGACTCATATTTTTCATTTAATTATTT
GGTGTGTGTGTGTGTGTATACATATGACTCCACATGTGTGGAGGTCAGAG
GACTATCTGCATGAGAGTTGGCTTTCTAACTCGTCCGTAATGTTCCTGGA
AACTGTTCTTGGGTCCTTGTAGCCCTAAACGCCACCCCCCCTTACTCTTC
TCCTCCTCACTCCTCGCCTTCAACATTCTGAATTTGTTTGCCTTTTTACT
CCTCCCCTATAAGTTTTGTTATGCCTTATG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGTATGTAGCAGTTGGTGGTGGGCACA
CCTGCTCCGTGGGAAGTAGGCTGAGCAGACTAGGATTTTGGGGAGGGGCC
TGTATGTGCCAAGACCCTGTTCGCCTCCAGGGATACACGTTAAAGAGACA
GTGGGGGTCACCTCTGGAAAAGAGAAGAGAAGAGAAGAGAGATTGAGGGG
GAGAAATTACACTTTGGAGGTGTGAAGCACAAGTGGGAAGACAGTGCTGC
ATCTGCAGAACTTGGGCCAGTTGGACCGAACCAGCAAGGCCACTCACACT
AGAGAGGCGACTCAGCAGATTCCACAAGCGTGTGTAGCTAAATGTCAAGA
CCAAACAGCCTAATTCAGGTTATCACAGACTCTTGTTAAGGCTGAGACCT
CCTCTTAACCATCATAACTCAGAATCAAATATATTCTAAAAGCCAGCAAA
CTGAATCATTATTATATTATATATAGGTAATATTATTATATACATCCAAC
TCCACTAGATCCAGCTAGATCTCAGTGTTCTGGAAACCTTCATGTGAGCA
TGTCTCCAGACTTACCAGGGCAGGCATGCTACAGCTTTCTCAAGTATCCT
TTCACCTGTCATGGAATCCGCCATATCCAGTATGCAGTCCCCTCGTCTTA
GGTCTGTTATTGGGATCCCCAGAAGATTTTCTCTGGGAGTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_m17.b1 MSMg01no335_m17.b1 CHROMAT_FILE:
MSMg01no335_m17.b1 PHD_FILE: MSMg01no335_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:40 2005
         (394 letters)



>mm_chr7_144081051_144081844
          Length = 794

 Score =  716 bits (370), Expect = 0.0
 Identities = 388/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttggtcagagaaatgtgccttcttccacctgcctctcagttcctgatcctgaacagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttggtcagagaaatgtgccttcttccacctgcctctcagttcctgatcctgaacagtc 260

                                                                       
Query: 61  cttacctccttcccagcaagaagagttactgcatggtcttagacctgctctgagcgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttacctccttcccagcaagaagagttactgcatggtcttagacctgctctgagcgacag 320

                                                                       
Query: 121 cactgttctcagtttgccctgctcacccttttcaaccccatataatcgactttgggggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cactgttctcagtttgccctgctcacccttttcaaccccatataatcgactttggtggca 380

                                                                       
Query: 181 ctggccttcatagagacttttccatgccaaattaggaagggtagagattcagatgtcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggccttcatagagacttttccatgccaaattaggaagggtagagattcagatgtcagg 440

                                                                       
Query: 241 acctttctcatttccatcttcctccccaaccctaataactctcagatatgttttgaaatt 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 accagcctcatttccatcttcctccccaaccctaataactctcagatatgttttgaaatc 500

                                                                       
Query: 301 ggaaatgtccccacagacttattcactaggtgttgattgtcagctgatgggcctttgaga 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaatgtccccacagacttactcactaggtgttgattgtcagctgatgggcctttgaga 560

                                             
Query: 361 agtgattggattctgagggctctgacctaatcag 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgattggattctgagggctctgacctaatcag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_m17.g1 MSMg01no335_m17.g1 CHROMAT_FILE:
MSMg01no335_m17.g1 PHD_FILE: MSMg01no335_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:40 2005
         (467 letters)



>mm_chr7_144257543_144258409
          Length = 867

 Score =  849 bits (439), Expect = 0.0
 Identities = 460/467 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcagttggtggtgggcacacctgctccgtgggaagtaggctgagcagactaggatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tagcagttggtggtgggcacacctgctccgtgggaagtaggctgagcagactaggatttt 730

                                                                       
Query: 61  ggggaggggcctgtatgtgccaagaccctgttcgcctccagggatacacgttaaagagac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 729 ggggaggggcctgtatgtgccaagaccctgttcgcctccagggacacacgttaaagagac 670

                                                                       
Query: 121 agtgggggtcacctctggaaaagagaagagaagagaagagagattgagggggagaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agtgggggtcacctctggaaaagagaagagaagagaagagagattgagggggagaaatta 610

                                                                       
Query: 181 cactttggaggtgtgaagcacaagtgggaagacagtgctgcatctgcagaacttgggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cactttggaggtgtgaagcacaagtgggaagacagtgctgcatctgcagaacttgggcca 550

                                                                       
Query: 241 gttggaccgaaccagcaaggccactcacactagagaggcgactcagcagattccacaagc 300
           | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| 
Sbjct: 549 gctggaccgaaccagcaaggctactcacactagagaggtgactcagcagattccacaaga 490

                                                                       
Query: 301 gtgtgtagctaaatgtcaagaccaaacagcctaattcaggttatcacagactcttgttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 489 gtgtgtagctaaatgtcaagaccaaacagcctaattcaggttatcacagactcctgttaa 430

                                                                       
Query: 361 ggctgagacctcctcttaaccatcataactcagaatcaaatatattctaaaagccagcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggctgagacctcctcttaaccatcataactcagaatcaaatatattctaaaagccagcaa 370

                                                          
Query: 421 actgaatcattattatattatatataggtaatattattatatacatc 467
           ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 369 actgaatcattattatattatatatagttaatattattatatacatc 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)