BAC Information

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BAC

Clone NameMSMg01-336B12
Chromosome7 (Build37)
Map Location 111,171,872 - 111,172,378
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640
Downstream geneOlfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336B12.T7 (MSMg01no336_b12.b1)MSMg01-336B12.TJ (MSMg01no336_b12.g1)
ACCAG451196AG451197
length727738
length of high quality
(start - end)		514 (43 - 556)499 (71 - 569)
definitionCHROMAT_FILE: MSMg01no336_b12.b1 PHD_FILE: MSMg01no336_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:04 2005CHROMAT_FILE: MSMg01no336_b12.g1 PHD_FILE: MSMg01no336_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCATAATGAGAGAATTAATGGAGAAGCTAATGTAGAAGAAAATGAAGA
AGCATTTCTGAAGAGAAATGAAGGAGAGTGTATTTGGGGGAAGAGGAGCT
AAGGGGATCTGGGCAGAATGAGTGAAGAATCTATGCTCAATAGGAAAAAA
AAAGTAGGTGTTTCCATAGGGGAGAAAAGCAGCTTTAACCAGGCAAGTTA
CCAACAGTATTCTGTTTGAAAGGGAAACCAATGCACTGGGAAAATGCTTT
CCTTACGTTTAGAAACAAAGAGGCCATCACAGAGAAATGTGTGGATGGGG
AGGGTGTGGTGTCTGCAGTACAATGGAATGAGCATCACCAGCAGGTTATG
GTTACTGGCATTGAGAGTCTCTGAATCATATTAGGGAAGATGACACTGAA
GCAGATAACCTTCCTTGGTATGGGAAAAGAAAGAAAATTTGACTATGTGT
GGGAAACATCTGTAGATTGGAAGCTGGAGAGGAAGATTACCAATATTTTT
GATGCAGGGCTTCTGTACACAGCTATTGCCTTGAGACCTTGAACCCGTAG
AGGAATGACATTGAGAACCTATTCTGACAGCTGATCGAATCGATTCTGGA
ATGATTGATAGCCAATAAATCCCGAGACTGTGCCCGCTTTTGAACCGGGA
AGATTCCGGCCCTAAACCGGGGGGAAG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAG
CACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGAGAGGATGTAGAGAAAGAGGTACACTC
CCCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCCAGAATATGTTCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAAAAAAAAAATGTG
ATACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACAAAAGAACGCAAATGATATGTACTCACTGATAAGTGG
ATATTAGCCCACAAACTTAGTATACCCAAGATATAAAATAAAATTTCCAA
AACACTTGGAATTAAGAAGAACAAAAACCAAAGGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_b12.b1 MSMg01no336_b12.b1 CHROMAT_FILE:
MSMg01no336_b12.b1 PHD_FILE: MSMg01no336_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:04 2005
         (514 letters)



>mm_chr7_111171668_111172578
          Length = 911

 Score =  835 bits (432), Expect = 0.0
 Identities = 490/510 (96%), Gaps = 3/510 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccataatgagagaattaatggagaagctaatgtagaagaaaatgaagaagcatt 64
           ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 711 gaattcccataa--agagaattaatggagaagctaatgtagaagaaaacgaagaagcatt 654

                                                                       
Query: 65  tctgaagagaaatgaaggagagtgtatttgggggaagaggagctaaggggatctgggcag 124
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 653 tctgaagagaaatgaaggagggtgtatttgggggaaggggagctaaggggatctgggcag 594

                                                                       
Query: 125 aatgagtgaagaatctatgctcaataggaaaaaaaaagtaggtgtttccataggggagaa 184
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 593 aatgagtgaagaatctatgttcaatagg-aaaaaaaagtaggtgtttccataggggagaa 535

                                                                       
Query: 185 aagcagctttaaccaggcaagttaccaacagtattctgtttgaaagggaaaccaatgcac 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 534 aagcagctttaaccaggcaagttaccaacagtgttctgtttgaaagggaaaccaatgcac 475

                                                                       
Query: 245 tgggaaaatgctttccttacgtttagaaacaaagaggccatcacagagaaatgtgtggat 304
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 474 tgggaaaatgccttccttacgtttagaaacaaagaagccatcacagagaaatgtgtggat 415

                                                                       
Query: 305 ggggagggtgtggtgtctgcagtacaatggaatgagcatcaccagcaggttatggttact 364
           |||||||||||||||||||||||||||||||| || |||||| ||||||||| |||| ||
Sbjct: 414 ggggagggtgtggtgtctgcagtacaatggaaagaccatcactagcaggttacggttcct 355

                                                                       
Query: 365 ggcattgagagtctctgaatcatattagggaagatgacactgaagcagataaccttcctt 424
           |||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |
Sbjct: 354 ggcattgagattctctgaatcatattaggaaagatggcactcaagcagataaccttccct 295

                                                                       
Query: 425 ggtatgggaaaagaaagaaaatttgactatgtgtgggaaacatctgtagattggaagctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggtatgggaaaagaaagaaaatttgactatgtgtgggaaacatctgtagattggaagctg 235

                                         
Query: 485 gagaggaagattaccaatatttttgatgca 514
           ||||||||||||||||||||||||||||||
Sbjct: 234 gagaggaagattaccaatatttttgatgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 911
Length adjustment: 10
Effective length of query: 504
Effective length of database: 901
Effective search space:   454104
Effective search space used:   454104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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