Query= MSMg01no336_n05.b1 MSMg01no336_n05.b1 CHROMAT_FILE:
MSMg01no336_n05.b1 PHD_FILE: MSMg01no336_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:00 2005
(552 letters)
>mm_chr7_124135569_124136523
Length = 955
Score = 992 bits (513), Expect = 0.0
Identities = 539/549 (98%), Gaps = 3/549 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaaatgtgccaacatctcccagatgcgcatgcctgtgggaaccgtgctgaacca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaattcaaaatgtgccaacatctcccagatgcgcatgcctgtgggaaccgtgctgaacca 851
Query: 65 ttttgaaccacaaactcttcttctataaaatggtttgataatgaacctccctggatgcgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttttgaaccacaaactcttcttctataaaatggtttgataatgaacctccctggatgcgg 791
Query: 125 tgcttttgagaactgcacgggataatgaataaagcacactttgttcttgaggcttcatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgcttttgagaactgcacgggataatgaataaagcacactttgttcttgaggcttcatca 731
Query: 185 aggctccttttgaatagtaggttatttttatttcttctcatactccattgaatggtggtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aggctccttttgaatagtaggttatttttatttcttctcatactccattgaatggtggtc 671
Query: 245 gtcagaccctgctgtctccctccaataaggcaggttcacagtctagtcacaaaactcagg 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 gtcagaccctgctgtctccctccaagaaggcaggttcacagtctagtcacaaaactcagg 611
Query: 305 cgacccagatgtcaacagccttcctagaagtgactcaggctgactgatggtggaccaatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cgacccagatgtcaacagccttcctagaagtgactcaggctgactgatggtggaccaatg 551
Query: 365 agttcaggtgtccttcctgagggaaaggacatttcaggacctcatggcattgtgaccttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agttcaggtgtccttcctgagggaaaggacatttcaggacctcatggcattgtgaccttt 491
Query: 425 taagtaccaggaagttcagcataggaggtattgactctgcttg---atttggggaagcgt 481
|||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||| |
Sbjct: 490 taagtaccaggaagttcaacataggaggtactgactctgcttgttgatttggagaagcat 431
Query: 482 tttcctactttctttgttctctccctttgttttgatgtttgcaagatgactcaactctcc 541
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 430 tttcctactttctttgttctctccctttgttttggtgtttgcaagatgactcaactctcc 371
Query: 542 attctgcct 550
||| |||||
Sbjct: 370 attttgcct 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 955
Length adjustment: 10
Effective length of query: 542
Effective length of database: 945
Effective search space: 512190
Effective search space used: 512190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_n05.g1 MSMg01no336_n05.g1 CHROMAT_FILE:
MSMg01no336_n05.g1 PHD_FILE: MSMg01no336_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:00 2005
(469 letters)
>mm_chr7_123974560_123975428
Length = 869
Score = 884 bits (457), Expect = 0.0
Identities = 466/469 (99%)
Strand = Plus / Plus
Query: 1 agtcatcattgcaaaacaactttagctttcctcccctaaaaggaaccctgaacccttctg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcatcattgtaaaacaactttagctttcctcccctaaaaggaaccctgaacccttctg 260
Query: 61 ttcttttgctcttatctattcacaaccttcagcttcaagaaagccatgagtctacctgct 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttcttttgctcttatctattcacaaccttcagctccaagaaagccatgagtctacctgct 320
Query: 121 gtctgctgaaatgttgctctgggcccttcacaggacaggtgggttctgtgactggcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgctgaaatgttgctctgggcccttcacaggacaggtgggttctgtgactggcctct 380
Query: 181 gtcactccgcatggcattttcaaggtccatccacaatgtagcattggggcctttgtgctc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtcactccgcatggcattttcaaggtccatccacaatgtagcattggagcctttgtgctc 440
Query: 241 catgtgcctttaatcagttatttaattagtttaatttgtacctcttttgcctggttctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgtgcctttaatcagttatttaattagtttaatttgtacctcttttgcctggttctgt 500
Query: 301 ctcctcagttttgacatataaaagatttctgagctaatttaagcatttttgacttcaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcctcagttttgacatataaaagatttctgagctaatttaagcatttttgacttcaggc 560
Query: 361 tttggtgacagcaatgtcacgcttgtctgtactgttgaatgggaatcttcaacttctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttggtgacagcaatgtcacgcttgtctgtactgttgaatgggaatcttcaacttctgag 620
Query: 421 ggaaatctgaggagcccattatccatgcttaggactgaggaaagcagag 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaatctgaggagcccattatccatgcttaggactgaggaaagcagag 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
