Query= MSMg01no337_a06.b1 MSMg01no337_a06.b1 CHROMAT_FILE:
MSMg01no337_a06.b1 PHD_FILE: MSMg01no337_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:15 2005
(564 letters)
>mm_chr7_137352645_137353608
Length = 964
Score = 955 bits (494), Expect = 0.0
Identities = 537/564 (95%), Gaps = 21/564 (3%)
Strand = Plus / Minus
Query: 1 atgtgtttaatgcctgagcaatttaaaaagaacaaaaccttgtccagcacatttttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atgtgtttaatgcctgagcaatttaaaaagaacaaaaccttgtccagcacatttttcctg 657
Query: 61 tgagggcagcctggcactgcacacaccagctaaaatcacacattcctgagttgtgctgct 120
||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 656 tgagggcagcccggcactgcacacaccagctaaaatcacacat----------------t 613
Query: 121 cctttaggctagtggggtgcagggctgtatggtgtcctgcccagtggggtggatctcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cctttaggctagtggggtgcagggctgtatggtgtcctgcccagtggggtggatctcagc 553
Query: 181 tgtgtttacctctgctcctcaggagggagattgtggacatctgacgtctgaattgacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgtgtttacctctgctcctcaggagggagattgtggacatctgacgtctgaattgacatc 493
Query: 241 agcatccaaaggccagtgtggcggggaccttgggtagacttggtattgaaagaacaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agcatccaaaggccagtgtggcggggaccttgggtagacttggtattgaaagaacaactg 433
Query: 301 tcatttagtaaatggaacaaggtagtacacttcactgagagggtgggtttatcacgatcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 432 tcatttagtaaatggaacaaggtagtacacttcactgagagggtgggtttgtcacgatcc 373
Query: 361 taggaacaaatcacatggattcaacaatattgtcacatttcctgtgtctccttaaaacaa 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 372 taggagcaaatcacatggattcaacaatattgtcacatttcctgtgtctcctt-----aa 318
Query: 421 aacaaaacaaaacaagacccccaccctccccaccccccaaaaaatccaaagccatggttg 480
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 317 aacaaaacaaaacaagccccccaccctccccacccccccaaaaatccaaagccatggttg 258
Query: 481 ggctggaggtgtagctcagatgtagcatgcttcccttgcatgcatgaagccccaggtttc 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 257 ggctggaggtgtagctcagatgtagcgtgcttcccttgcatgcatgaagccccaggtttc 198
Query: 541 acccccaataccacaggaactgag 564
||||||||||||||||||||||||
Sbjct: 197 acccccaataccacaggaactgag 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_a06.g1 MSMg01no337_a06.g1 CHROMAT_FILE:
MSMg01no337_a06.g1 PHD_FILE: MSMg01no337_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:15 2005
(518 letters)
>mm_chr7_137188818_137189739
Length = 922
Score = 874 bits (452), Expect = 0.0
Identities = 499/522 (95%), Gaps = 15/522 (2%)
Strand = Plus / Plus
Query: 1 tctacaagactcgagatccatcagatggaaatcgtggtggtcat---cgacacagctttt 57
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tctacaagactcgagatccatcagatggaaatcgtggtggtcattatcgacacagctttt 260
Query: 58 tcagtcaccaccagaatctcaaaagcagatttgtaagggctcccagcagtcactaaacca 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtcaccaccagaatctcaaaagcagatttgtaagggctcccagcagtcactaaacca 320
Query: 118 accttgggtcccacctccacatctccagctaatagagtccactagttcactgttccattc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttgggtcccacctccacatctccagctaatagagtccactagttcactgttccattc 380
Query: 178 tctccaccccttctgctgtagccatagaagtcttctgcaagcttgcaaccttctatcctt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctccaccccttctgctgtagccatagaagtcttctgcaagcttgcaaccttctatcctt 440
Query: 238 gctacttactctccatggatggaaggttgctcccgtggctgtcacaagtttaactccttt 297
||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 441 gctacttactctccacggatggaaggttgctcccttgtctgtcacaagtttaactccttt 500
Query: 298 tcactctcagtgacctccccttgacttgctgtgcaatgcccttcctgcccccgtttatgt 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tcactctcagtgacctccccttgacttgctgtgcaatgcccttcctacccccgtttatgt 560
Query: 358 cattgttgcttacagctctctagaaatcacatatttctcagaaattaccttggaaagtat 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 cattgttgcttacagctctctagaaatcacatatttctcagaaattatcttggaaagtat 620
Query: 418 ctgtgaagatgtttggc-ttcagtctgtcctagagagaaagcttcagaggggggtggggg 476
|||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 621 ctgtgaagatgtttggtgttcagtctgtcctagagagaaagcttca--------tggggg 672
Query: 477 gcggcaagcctgggctgtcgtctaccatgacctatccccact 518
|| ||||||||||||| |||||||||||||||||| ||||
Sbjct: 673 gc---aagcctgggctgttgtctaccatgacctatcctcact 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 922
Length adjustment: 10
Effective length of query: 508
Effective length of database: 912
Effective search space: 463296
Effective search space used: 463296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
