BAC Information

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BAC

Clone NameMSMg01-338C09
Chromosome7 (Build37)
Map Location 25,684,282 - 25,684,809
singlet/doubletsinglet
Overlap geneCd79a
Upstream geneV1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19
Downstream geneArhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338C09.T7 (MSMg01no338_c09.b1)MSMg01-338C09.TJ (MSMg01no338_c09.g1)
ACCAG452752AG452753
length793751
length of high quality
(start - end)		322 (20 - 341)527 (68 - 594)
definitionCHROMAT_FILE: MSMg01no338_c09.b1 PHD_FILE: MSMg01no338_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:43 2005CHROMAT_FILE: MSMg01no338_c09.g1 PHD_FILE: MSMg01no338_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACTCCTATAGGGATACGATCCGCGGAATTCCCAGCTCCCCTCTCGCCTGG
AATCTCTTTACTCTGTGTCTTGTTCTGCTGAGCTGTGATAGGGTATATAA
GGAAGATCTAGGCTAATTAGTGGGAAACCCTGGACTTGAACCCTTGTACC
ACATGAACTGGGTGTGAAGCTGTGTGCCTGTAATGCCAGCATGGGGCTGT
GGGTGGAGACAGTCAACTTCATCTGTACCAACATGTGGAGTTAAGGGGCA
GCCTGGACTAGAGAAACTCAGGGCCTAGGGGGAATGAAGAAATAGGGAGA
AAGAGAGGGAGGGAGGGAGAGTGCAAGGGAAGGAGGGAAGTAGGTTGTTT
TTTGTTTTTTAGAATGGAAAGAGANAAGATTATATTGGTAAAAAAGAATA
AACACCAATTTTTAATTTTATATTTTTAATTATTGAATGTAAATTATTGT
TTAATTTGTATTTATTGTGATTTATTTTATATTTTTATTTTTATATTATA
TAGTTATTATTGTATTTTTATTTTAATTATTTTTTTTATTATTTGATTAT
GATTATATTTTTTATATATTTAATTGTTTTTGATAGTAATGTATTATAAT
ATTTTTTTAAATTTTTATTATGATATTATAAATATATTTTATTATGTAAA
TTATTTATGTTATATATTTTTATTTTTTAATAAGATTTAATATTTAAGAT
AATATTATAATTATAATAATATATATGTATTTATTATAAGTATTTATATT
TTTATATATTTAATATGATTATATTTTTTTTATTATTATATTG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAGGACCAGCTGGACACTGGGAGTCACAGTCC
AGGCCCAGGTAAGCCAAGATGACTTGAGGGGTGTCACTTGGGGAGACTCA
CCCTGAATAGCAGCAGCGTCCCTGGCACCACTGCACAGAACAGCAAGATG
ATCCCTTCTGCCGTGATGATGCGGTTCTTGGTACCTTCCCCCATGTCCAG
GAAGGGCCTAGGGACTGGATCTGTGAAGACAGGGTGCTGCTCAGCATTCT
GGTGTCCCTTCTTCTCCCAGCCCTGACCCTTGCGAGGTCAGGGAGCCCTG
AAGCCACCATCTCTGTGGCTGGTGGCAGGTCCAGGAGGGAGGAGCTAGCT
CTGCTCCTAATGTTTTGGAAGAAAGCGGGAGCAGGGAACGCAAGGAGGCC
AGCGCCCTCCCTACTCACTGCGCACGCGGAGGTAAGTACCACAGGAGCGT
TTTAATATGTTGTTTTCTATCACTTGGCACCAGTACAAGCCCCTGTGGTT
CTTGTTTACTTCGGGGAAGAACAGCTGGCCTGTGGTACCCTGGCCAGGAC
CCAGTGGCACTGGGGGCCATGTGATGTTAGACTGAAGGCTGAACCACCAT
GTGATATTAGGGTTCCTGTCATTGTTTTCCCAGGTGAGGCGGGCCTCCTC
GCCCAAGTTCACCGGTAGGTATGGTGGACCCCCTTCTACCCGCTAGGGCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_c09.g1 MSMg01no338_c09.g1 CHROMAT_FILE:
MSMg01no338_c09.g1 PHD_FILE: MSMg01no338_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:43 2005
         (527 letters)



>mm_chr7_25684082_25685009
          Length = 928

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%), Gaps = 1/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggaccagctggacactgggagtcacagtccaggcccaggtaagccaagatgacttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agaggaccagctggacactgggagtcacagtccaggcccaggtaagccaagatgacttga 669

                                                                       
Query: 61  ggggtgtcactt-ggggagactcaccctgaatagcagcagcgtccctggcaccactgcac 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggggtgtcacttgggggagactcaccctgaatagcagcagcgtccctggcaccactgcac 609

                                                                       
Query: 120 agaacagcaagatgatcccttctgccgtgatgatgcggttcttggtaccttcccccatgt 179
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 608 agaacagcaagatgatcccttctgctgtgatgatgcggttcttggtaccttcccccatgt 549

                                                                       
Query: 180 ccaggaagggcctagggactggatctgtgaagacagggtgctgctcagcattctggtgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ccaggaagggcctagggactggatctgtgaagacagggtgctgctcagcattctggtgtc 489

                                                                       
Query: 240 ccttcttctcccagccctgacccttgcgaggtcagggagccctgaagccaccatctctgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccttcttctcccagccctgacccttgcgaggtcagggagccctgaagccaccatctctgt 429

                                                                       
Query: 300 ggctggtggcaggtccaggagggaggagctagctctgctcctaatgttttggaagaaagc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 428 ggctggtggcaggtccaggagggaggagctagctctgctcctaatgttttggaagaaaga 369

                                                                       
Query: 360 gggagcagggaacgcaaggaggccagcgccctccctactcactgcgcacgcggaggtaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gggagcagggaacgcaaggaggccagcgccctccctactcactgcgcacgcggaggtaag 309

                                                                       
Query: 420 taccacaggagcgttttaatatgttgttttctatcacttggcaccagtacaagcccctgt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taccacaggagcgttttaatatgttgttttctatcacttggcaccagtacaagcccctgt 249

                                                           
Query: 480 ggttcttgtttacttcggggaagaacagctggcctgtggtaccctggc 527
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggttcttgtttacttcggggaagaacagctggcctgtggtaccctggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space:   474606
Effective search space used:   474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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