BAC Information

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BAC

Clone NameMSMg01-338E21
Chromosome7 (Build37)
Map Location 146,953,345 - 146,953,865
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253
Downstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338E21.T7 (MSMg01no338_e21.b1)MSMg01-338E21.TJ (MSMg01no338_e21.g1)
ACCAG452868AG452869
length720739
length of high quality
(start - end)		590 (46 - 635)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no338_e21.b1 PHD_FILE: MSMg01no338_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:54 2005CHROMAT_FILE: MSMg01no338_e21.g1 PHD_FILE: MSMg01no338_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATAGGGCCAGGATCCGCGGAATTCATCAGAATGGTCCCAAGACT
TGGCACAGCCAAGAAAATAAGAGTTGCACTGTATGATCACATGATAGGAG
ATGATTTAGCAGTGTTTCTCAGCCTGTGGCTTGAAGTCCCATTTCAAGTC
AAACGACCCTTTCACAGAGGTCACCTAAGACCCTTGGAAAACACAGGTAT
TTATATCACACTTCATAATGTAGCAAAATTACAGGTCTGAAGTAGGAACA
AAAACAAATTTTTTGTTGGGGATCACCAGAACATGAGGAGCCGTATTAGG
AAGGTTGAGAATCATAGATTTAGCAGATTCACAAAACATGTGACGAGACA
AAAAAAGCCAAAATTGGACTTCCAGAGATAACACTTAAAAAGCTTTGAGA
AGCTCGGCCCTGGCAGCAGGGCTCACAGTCAAGTCTCTGACCCAGGATTG
TACCCAGAGCATACACAGAACCCTCAGTGGTGCAAGGATGGGGAGGGACA
GGGTGGGGACATGGTGGGTAGGCTGAGAATGATCAGGCCCTTCAGGAAAG
GAGATGGCCAAGCCACCGTGGACTGTGACAGCCATGGGGCCAGAGGCTCC
AGCAGATGCCCCATCTGACCTTAGCTCCTCAGGACCAGAGGTGAGTTTTG
TAGCACTGTAACACCAGAATGTATGGAGAGTTCAGGGAAACCGGACCCTC
GATCCCTCTTAGCCTGTGTG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCACAGCATAAAACTCANAATGTAACA
AGGCATTGTTATAAAGGAGGATGAAGCTGGAGAGACTGCTCAGGAGTTAA
CAGCACTGATTGCTCTTCCAGAATACCCAGTTGGTCTCTAACTCCAGTTC
CAGGGGATTTGATGCTCTCTCTGGCCTTCAGAGACACAAGAGATCATGAA
TGCAGGCAAAATAGTCATTACATGTGGCATATATATATATATATATATAT
ATATATATATATATATATATATATATATATNATATATGTGTGTGTATATA
TATATATATATGTGTATATATATATATGTGTGTGTGTGTGGGGGAGAGAG
AGTGTGTGTGTGTGTGTGTGAGTGGAGAGAGAGAAAGTGTGTATATTGTG
AGAGAGAAGTGAGGGGTGATCTCGCGAGAGGAGTCTCGCGAGCTATATCC
CTTTATATAAAAGCGGCGAGATATATAGAGAGATATAGGGAGAGAGATAG
CGCGCGACTCTCTATAGAGTGGCACATATATGTACACGGAGGGGCGCGCG
CGAGACACACTCTATAGTCTTGGGGGGGGGCGCCTACGCGATATATATNN
NNTTNNNTNNNNTATNCNCCTCTTTTCTTTAANTTTNNCCCCNCCCTCTT
TNTTTTTTTCCCCCCCCCCTTTTCTNCCTTCTTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_e21.b1 MSMg01no338_e21.b1 CHROMAT_FILE:
MSMg01no338_e21.b1 PHD_FILE: MSMg01no338_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:54 2005
         (590 letters)



>mm_chr7_146952876_146953865
          Length = 990

 Score =  977 bits (505), Expect = 0.0
 Identities = 517/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 70  tttctcagcctgtggcttgaagtcccatttcaagtcaaacgaccctttcacagaggtcac 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tttctcagcctgtggcttgaagtcccatttcaagtcaaacgaccctttcacagaggtcac 931

                                                                       
Query: 130 ctaagacccttggaaaacacaggtatttatatcacacttcataatgtagcaaaattacag 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ctaagacccttggaaaacacaggtatttatatcacacttcataatgtagcaaaattacag 871

                                                                       
Query: 190 gtctgaagtaggaacaaaaacaaattttttgttggggatcaccagaacatgaggagccgt 249
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gtatgaagtaggaacaaaaacaaattttttgttggggatcaccagaacatgaggagccgt 811

                                                                       
Query: 250 attaggaaggttgagaatcatagatttagcagattcacaaaacatgtgacgagacaaaaa 309
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 810 attaggaaggttgagaatcatagattcagcagattcacaaaacatgtgacaagacaaaaa 751

                                                                       
Query: 310 aagccaaaattggacttccagagataacacttaaaaagctttgagaagctcggccctggc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aagccaaaattggacttccagagataacacttaaaaagctttgagaagctcggccctggc 691

                                                                       
Query: 370 agcagggctcacagtcaagtctctgacccaggattgtacccagagcatacacagaaccct 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agcagggctcacagtcaagtctctgacccaggattgtacccagagcatacacagaaccct 631

                                                                       
Query: 430 cagtggtgcaaggatggggagggacagggtggggacatggtgggtaggctgagaatgatc 489
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 630 cagtggtgcaaggatggggagggacagggtcgggacatggtgggtaggctgagaatgatc 571

                                                                       
Query: 490 aggcccttcaggaaaggagatggccaagccaccgtggactgtgacagccatggggccaga 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aggcccttcaggaaaggagatggccaagccaccgtggactgtgacagccatggggccaga 511

                                                    
Query: 550 ggctccagcagatgccccatctgaccttagctcctcaggac 590
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggctccagcagatgccccatctgaccttagctcctcaggac 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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