Query= MSMg01no339_g01.b1 MSMg01no339_g01.b1 CHROMAT_FILE:
MSMg01no339_g01.b1 PHD_FILE: MSMg01no339_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:11 2005
(460 letters)
>mm_chr7_120062805_120063665
Length = 861
Score = 553 bits (286), Expect = e-162
Identities = 381/426 (89%), Gaps = 28/426 (6%)
Strand = Plus / Minus
Query: 41 tgatctttctggttggcctccaaagttctggggttaccagcatgagcttgtaatagttaa 100
||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 861 tgatctttcaggttggcctccaaagttctggggttaccagcatgtgcttgtaatggttaa 802
Query: 101 aaacatgaagccaaccaaccctagtagtcatccacgttacctgctgtctccta-cctaag 159
||||||||||||||||||||||||||||| ||| ||| || |||
Sbjct: 801 aaacatgaagccaaccaaccctagtagtc-----------------tcttctatcc-aag 760
Query: 160 cctctggcttccaggagtgttgacatggctgtttgctgccctctgctgtccacaagagga 219
|| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 759 ccgccggcttccaggagtgttgacatggcagtttgctgccctctgctgtccacaagagga 700
Query: 220 atgtactaa----ggtttttttttttcttttttcttttttggttggttggttggtttgat 275
| ||||||| ||||||| || || |||||| |||||| ||||||||||||||||||
Sbjct: 699 acgtactaaagtgggtttttgttgtt-tttttt-tttttt--ttggttggttggtttgat 644
Query: 276 ttgatttcgtttta-ttttttaattttcaagaaccctgtggccccagatggcccagccat 334
||| ||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 643 ttggtttggttttatttttttaatttccaagaaccctgtggccccaggtggcccagccat 584
Query: 335 acaaaacttgctctactcctctgaaaatagccccagaaatggtagtgccaggcctgactg 394
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acaaaacttgctctacttctctgaaaatagccccagaaatggtagtgccaggcctgactg 524
Query: 395 catagtctgaggggcccaaagaccttggtaaaatgtgtgaccttgcaagttgtcctctga 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 523 tatagtctgaggggcccaaagaccttggtaaaatgtgtgaccttgcaagttgtcccctga 464
Query: 455 tttcca 460
||||||
Sbjct: 463 tttcca 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_g01.g1 MSMg01no339_g01.g1 CHROMAT_FILE:
MSMg01no339_g01.g1 PHD_FILE: MSMg01no339_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:11 2005
(244 letters)
>mm_chr7_119905017_119905660
Length = 644
Score = 439 bits (227), Expect = e-128
Identities = 233/235 (99%)
Strand = Plus / Plus
Query: 1 agcagggtgattagatattggtaagtttggtgttggctgtgggatatgtgtgtaggacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agcagggtgattagatattggtaagtttggtgttggctgtgggatatgtgtctaggacga 260
Query: 61 gggtaactcagttcctagtacttcccagttgtatctgtttttgagtatgggtgtctttct 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtaactcagttcccagtacttcccagttgtatctgtttttgagtatgggtgtctttct 320
Query: 121 ccttaagttaacactatccgattactgtctgttggtggccagccagatttaaaatgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaagttaacactatccgattactgtctgttggtggccagccagatttaaaatgaggc 380
Query: 181 aaccgtttttcctcactagggaggaagagtctagtatggttgtgggtttcacagg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccgtttttcctcactagggaggaagagtctagtatggttgtgggtttcacagg 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
