TTTTNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCGAGCG
AGCGCGCGGAATTCTTCNATTCAAGCAACTGTGATTAAAGCACATTCACC
TCTGTTTGTTTTGGGGTTTGTTGTTCCTGTTCTTTTAACATATGTTCAGT
GTATTGAAATCAGTTCTCAAGCACTATACTGAGTGAGTTATGCCCTGACA
TGTGGTATTGAGTCTTAAAAAAATCAGTTTTTATGATTGGAGACCATAAT
AGAGATTAACTCTAACAACAACAAAGAATCCCTGCATGCTGCTTATCTAA
AGAGTTGATTCTCTCTCTCATATTCTCTCTTGCATTCTTCCTCTCTTTCT
CCCTCTCCTTCTCCTTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCC
TTCTCCTCTCTCTTTCTGCTGTTTAATATTACTTTTCTTTAATTTTGATA
TTCACATCCTTGGTTTTTGTCTCTCACATGCTGCAACATCTGCAATGTTA
GGACCCCTGGTATTAGCAATGGCTTTGAATCCCTATGGAAAGTTCTGAGC
TGAGTCCTCCTTGATTAGTGATGGGGGAGTCTTTGTTTGTTTTAGGCTTT
GATGCTCATTCCATGAAGTTAGGAATATCTTCTCCTGATATCCTCTGTAC
AATATACTTTCCATCTTACTCTTGCGTATATTTTGCTTTTG

TTATTTTTTTNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTC
CTCTACCATCATCATGAGATATGCTTTTAAATCCAGGTCTAACTTTTCAG
GTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGAT
GATGGTGAGTGGTCCTGGCTTCCGTTAGTAGGATTCTTACGTTTACCTTT
CGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGA
GATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGAC
AAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGC
TCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCC
TGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGC
TTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCCGCCTC
AGAAGCTCTGTGGCTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTAAA
GATGGCGCCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAACGGTT
GGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCCCGCAAAGTC
CCGGAGTCAAAAAGTTCN

Query= MSMg01no339_m09.b1 MSMg01no339_m09.b1 CHROMAT_FILE:
MSMg01no339_m09.b1 PHD_FILE: MSMg01no339_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:41 2005
         (444 letters)



>mm_chr7_76559433_76560283
          Length = 851

 Score =  663 bits (343), Expect = 0.0
 Identities = 415/449 (92%), Gaps = 25/449 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcacattcacctctgtttgttttggggt---ttgttgttcctgttcttttaacatatg 57
           ||||||||||||||||||||||||||||||   ||||||||  |||||||||||||||||
Sbjct: 439 aagcacattcacctctgtttgttttggggtttgttgttgttgttgttcttttaacatatg 380

                                                                       
Query: 58  ttcagtgtattgaaatcagttctcaagcactatactgagtgagttatgccctgacatgtg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcagtgtattgaaatcagttctcaagcactatactgagtgagttatgccctgacatgtg 320

                                                                       
Query: 118 gtattgagtctt----aaaaaaatcagtttttatgattggagaccataatagagattaac 173
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtattgagtctttaaaaaaaaaatcagtttttatgattggagaccataatagagattaac 260

                                                                       
Query: 174 tctaacaacaacaaagaatccctgcatgctgcttatctaaagagttgattctctctctca 233
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 259 tctaacaacaacaaagcatccctgcatgctgcttatctaaagagttgattctctctctc- 201

                                                                       
Query: 234 tattctctcttgcattct-tc-ctctct----ttctccctct--ccttctccttctccct 285
              |||||||  |  ||| || ||||||    ||||  ||||  | |||||| ||||| |
Sbjct: 200 ---tctctct--c--tctctctctctctcaaattct--ctcttgcattctccctctcctt 150

                                                                       
Query: 286 ctccctctccctctccctctccctctccttctcctctctctttctgctgtttaatattac 345
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cttcctctccctctccctctccctctccttctcctctctctttctgctgtttaatattac 90

                                                                       
Query: 346 ttttctttaattttgatattcacatccttggtttttgtctctcacatgctgcaacatctg 405
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 89  ttttctttaatcttgatattcacatccttggtttttgtttctcacatgctgcaacatctg 30

                                        
Query: 406 caatgttaggacccctggtattagcaatg 434
           |||||||||||||||||||||||||||||
Sbjct: 29  caatgttaggacccctggtattagcaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 851
Length adjustment: 10
Effective length of query: 434
Effective length of database: 841
Effective search space:   364994
Effective search space used:   364994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)