BAC Information

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BAC

Clone NameMSMg01-339O17
Chromosome7 (Build37)
Map Location 105,698,844 - 105,880,598
singlet/doubletdoublet
Overlap geneA630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
Upstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
Downstream geneWnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339O17.T7 (MSMg01no339_o17.b1)MSMg01-339O17.TJ (MSMg01no339_o17.g1)
ACCAG454086AG454087
length733739
length of high quality
(start - end)		618 (43 - 660)549 (77 - 625)
definitionCHROMAT_FILE: MSMg01no339_o17.b1 PHD_FILE: MSMg01no339_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:52 2005CHROMAT_FILE: MSMg01no339_o17.g1 PHD_FILE: MSMg01no339_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,880,055 - 105,880,598)(105,698,844 - 105,699,392)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTACTTCCCCAGGAAAAGAAACTAAGATGCACGACGTAACGTTCAT
CATATTGGTAAATTTCCCTGTGTTTTTAATCTCATTCTGAAGCTGATTCT
GGAAGCAGAGTTGCCCCCTCCCCAGTTTCAGATGCAAGTGGGGTTGTCTC
AAAGCGCCCTCAAAGGTCTGGGGGTGTGCTGGCCTCACTAACTGTGATAG
GGACGGGAGAGGAAGCCCAGGAGTAGAAACATCATGATCTTGAGGGCAGC
TGGAAGGTAACAAGGTCTCCACTATATGAAAGTGTCTGGCGTGGGACATT
AAGCTGTGGTGGTGTTTTGTGCTCTCTTAGTTTTTCAATTTTTTAATTAA
TTTTTATTTTCTAATTTTACTTTAGTAAGTTAAAAAAAAAAAAGAGAGAT
AGCCAAAACAGAAAACAAAGCCATTACTCTCTGGACTGTACAAAGTACCT
TCTCAAAATAAAGACATTCCTTGAAGTACGGGGATTTGTGGTAAAATAGT
TTTGACAATGTTTTAGTCAGGTAGTCTATTGTGCTGAAACATTATTACCA
AAGATAACTGGGGAGGAAAGGGTCTTTTTGGCTTACGCCACCACATCACT
GTCCATCATCAAAGGAAGTCAGGCCAGAAACTCCCTGAAAGCAGGAGCTG
ATGCATAGGCATTGGAGGGGTACTGCTTACTGG

TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGTGATCTGAGCCTGGGGAA
TAAGGACTGGAAGAGCCATATCTGCAGAGAGTCCACCTTCTCTTCCTGGC
CCTAATACACTCAAATGCCACCGAGTAGCCTACACAGTAAGAAAGAGGTC
CTGGCAAGGCTGACTTCCCAACCATGGTAGCCTCTCATGCATGCAGCAAG
CTCCATCTTCTGCTGTAGAAAGCCACCAACTAACTGTGTGGCTGCCCTGA
CTGGTTTGCCACAACTGGACCACAAAGCATTTCAGCCTGGCCCCTGCAGC
AGGGTGTGAGCCAGCAGCTCTGGGGAGGTTATCAGAGTCCCCAGAGGGAA
TGGGGGCTCCCTGGGGGTCATCTGGAATGTGGAAAAGCCAGTTGGGAAGG
GATTCCTGAGAGCAGCAGGCTCCAGGGGAAGGACTCCGGGACTACATGAG
GTCTCATGAACCCTCAGCTGTGCTATTTCCCCTCAGCAAGTGCTGGGTGG
GGCTGCCAGGACTCTTACCATTTACAGAGCTGCATAAGAGGCTGTCTTTG
AAGAGACAGCATAGTCCAACTGTGTGTAAATGTTGTAGGAACAGCAGATA
AAACCAACACAATCGGCACTACTTGGAGTTTGCATTCCCGTGGAGGGAAG
TGAACAGATATACCAACTCCCTATGGGAGAGTCCCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_o17.b1 MSMg01no339_o17.b1 CHROMAT_FILE:
MSMg01no339_o17.b1 PHD_FILE: MSMg01no339_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:52 2005
         (618 letters)



>mm_chr7_105880055_105881072
          Length = 1018

 Score =  975 bits (504), Expect = 0.0
 Identities = 534/544 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgttacttccccaggaaaagaaactaagatgcacgacgtaacgttcatcatat 63
           |||||||||||||  |  ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 544 ggaattctgttacagcaacaggaaaagaaactaagatgcacgacgtaacgttcatcacat 485

                                                                       
Query: 64  tggtaaatttccctgtgtttttaatctcattctgaagctgattctggaagcagagttgcc 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 484 tggtaaatttccctgtgttttttatctcattctgaagctgattctggaagcagagttgcc 425

                                                                       
Query: 124 ccctccccagtttcagatgcaagtggggttgtctcaaagcgccctcaaaggtctgggggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccctccccagtttcagatgcaagtggggttgtctcaaagcgccctcaaaggtctgggggt 365

                                                                       
Query: 184 gtgctggcctcactaactgtgatagggacgggagaggaagcccaggagtagaaacatcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgctggcctcactaactgtgatagggacgggagaggaagcccaggagtagaaacatcat 305

                                                                       
Query: 244 gatcttgagggcagctggaaggtaacaaggtctccactatatgaaagtgtctggcgtggg 303
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 304 gatcttgagggcagctggaaggtaacagggtcaccactatatgaaagtgtctggcgtggg 245

                                                                       
Query: 304 acattaagctgtggtggtgttttgtgctctcttagtttttcaattttttaattaattttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acattaagctgtggtggtgttttgtgctctcttagtttttcaattttttaattaattttt 185

                                                                       
Query: 364 attttctaattttactttagtaagttaaaaaaaaaaaagagagatagccaaaacagaaaa 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 184 attttctaattttactttagtaagttaaaaaaaaaagagagagatagccaaaacagaaaa 125

                                                                       
Query: 424 caaagccattactctctggactgtacaaagtaccttctcaaaataaagacattccttgaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caaagccattactctctggactgtacaaagtaccttctcaaaataaagacattccttgaa 65

                                                                       
Query: 484 gtacggggatttgtggtaaaatagttttgacaatgttttagtcaggtagtctattgtgct 543
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 64  gtacggggatttgtggtaaaatagttttgacaatgttttagttaggtagtctattgtgct 5

               
Query: 544 gaaa 547
           ||||
Sbjct: 4   gaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_o17.g1 MSMg01no339_o17.g1 CHROMAT_FILE:
MSMg01no339_o17.g1 PHD_FILE: MSMg01no339_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:52 2005
         (549 letters)



>mm_chr7_105698644_105699592
          Length = 949

 Score = 1023 bits (529), Expect = 0.0
 Identities = 544/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctggtgatctgagcctggggaataaggactggaagagccatatctgcagagagtccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctggtgatctgagcctggggaataaggactggaagagccatatctgcagagagtccac 260

                                                                       
Query: 61  cttctcttcctggccctaatacactcaaatgccaccgagtagcctacacagtaagaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctcttcctggccctaatacactcaaatgccaccgagtagcctacacagtaagaaaga 320

                                                                       
Query: 121 ggtcctggcaaggctgacttcccaaccatggtagcctctcatgcatgcagcaagctccat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ggtcctggcaaggctgacttcccaaccatggtagcctcccatgcatgcagcaagctccat 380

                                                                       
Query: 181 cttctgctgtagaaagccaccaactaactgtgtggctgccctgactggtttgccacaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgctgtagaaagccaccaactaactgtgtggctgccctgactggtttgccacaact 440

                                                                       
Query: 241 ggaccacaaagcatttcagcctggcccctgcagcagggtgtgagccagcagctctgggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaccacaaagcatttcagcctggcccctgcagcagggtgtgagccagcagctctgggga 500

                                                                       
Query: 301 ggttatcagagtccccagagggaatgggggctccctgggggtcatctggaatgtggaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttatcagagtccccagagggaatgggggctccctgggggtcatctggaatgtggaaaa 560

                                                                       
Query: 361 gccagttgggaagggattcctgagagcagcaggctccaggggaaggactccgggactaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 561 gccagttgggaagggattcctgagagcagcaggctccaggggaaggactccggggcttca 620

                                                                       
Query: 421 tgaggtctcatgaaccctcagctgtgctatttcccctcagcaagtgctgggtggggctgc 480
           || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 tgtggtctcatgaaccctcagctgtgctatttcccctcagcaagtgctgggcggggctgc 680

                                                                       
Query: 481 caggactcttaccatttacagagctgcataagaggctgtctttgaagagacagcatagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggactcttaccatttacagagctgcataagaggctgtctttgaagagacagcatagtc 740

                    
Query: 541 caactgtgt 549
           |||||||||
Sbjct: 741 caactgtgt 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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