BAC Information

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BAC

Clone NameMSMg01-340C11
Chromosome7 (Build37)
Map Location 127,808,318 - 127,808,734
singlet/doubletsinglet
Overlap gene4930408O21Rik
Upstream geneBC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2
Downstream geneBC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340C11.T7 (MSMg01no340_c11.b1)MSMg01-340C11.TJ (MSMg01no340_c11.g1)
ACCAG454263AG454264
length719740
length of high quality
(start - end)		642 (45 - 686)427 (80 - 506)
definitionCHROMAT_FILE: MSMg01no340_c11.b1 PHD_FILE: MSMg01no340_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:07 2005CHROMAT_FILE: MSMg01no340_c11.g1 PHD_FILE: MSMg01no340_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGAGTCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTACTTTATATATATTGGATATTAGTCCTCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCACG
AGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTT
TCTCCTCTATAAGTGTCAGTGTCTCTGGTTTTATGTGAAGCTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCAT
TCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTTGTC
TACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTANGTCAGGCATGTTGATTCCACCAGAGGTTCTTTTA
TCCTTGAGAAGAGTTTTTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGTTTATTTTCTTTCCTC
CTGATAGAAGTCACTCTCTTACAACATAATTAAGCAGTGGGGACACCAAG
CTGTAGTTTTTAGCTATAAACACCCCTTTTAACATCAGGCGCACTGCTCA
TTCTAAGAGGGTAAGTTTGTTACTGTAATTAACCTCAGAGGAAGAGCAGC
TGTTTCATACTGAGCAGCCTGAAGGTAGGTAGCTCTGAGAGAAGCCTTGC
TGAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAGACAGGATTTCT
CTGTGTATCCCTGGCTGTCCTGGAACTCACTCTGTAAACCAGGCTGGTCT
CGAACTCAAAAATCCACCTGCCTCAAGTGCTGGGATTAAAGGCATGTGCC
ACCACGCCCCGGCCACCTTGCTGAATTCTGAAGTTAGCTTCAGGACATGC
TTCTGTTTATGTCTTGCTTTTTGAGACAGTCTCACCACGTAGATCAGGCT
GGCCTTGAACCTTCCATCTTCCTGCCTCAGCCTTCTGAGTACTGGTTTTA
CAAGGATGCATGACTGTGTCCAGCTCAACATGTGGCTGGTTTTATTCTCA
TCTACTTCTCAAATTCAATGTAGGAAGATCCCTCACACTTCCTAAAAAAG
GATCTGGGACTAAAAGAAAAGTGACCCTGGGGACGTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_c11.g1 MSMg01no340_c11.g1 CHROMAT_FILE:
MSMg01no340_c11.g1 PHD_FILE: MSMg01no340_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:08 2005
         (427 letters)



>mm_chr7_127808291_127809117
          Length = 827

 Score =  760 bits (393), Expect = 0.0
 Identities = 414/427 (96%), Gaps = 10/427 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgtttattttctttcctcctgatagaagtcactctcttacaacataattaagcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agctgtttattttctttcctcctgatagaagtcactctcttacaacataattaagcagtg 385

                                                                       
Query: 61  gggacaccaagctgtagtttttagctataaacaccccttttaacatcaggcgcactgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggacaccaagctgtagtttttagctataaacaccccttttaacatcaggcgcactgctc 325

                                                                       
Query: 121 attctaagagggtaagtttgttactgtaattaacctcagaggaagagcagctgtttcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attctaagagggtaagtttgttactgtaattaacctcagaggaagagcagctgtttcata 265

                                                                       
Query: 181 ctgagcagcctgaaggtaggtagctctgagagaagccttgctgaattctttttttttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||          ||
Sbjct: 264 ctgagcagcctgaaggtaggtagctctgagagaagccttgctgaattc----------tt 215

                                                                       
Query: 241 tttttttttttttttcggagacaggatttctctgtgtatccctggctgtcctggaactca 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tttttttttttttttctgagacaggatttctctgtgtatccctggctgtcctggaactca 155

                                                                       
Query: 301 ctctgtaaaccaggctggtctcgaactcaaaaatccacctgcctcaagtgctgggattaa 360
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 154 ctctgtagaccaggctggtctcgaactcagaaatccacctgcctcaagtgctgggattaa 95

                                                                       
Query: 361 aggcatgtgccaccacgccccggccaccttgctgaattctgaagttagcttcaggacatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  aggcatgtgccaccacgccccggccaccttgctgaattctgaagttagcttcaggacatg 35

                  
Query: 421 cttctgt 427
           |||||||
Sbjct: 34  cttctgt 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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