BAC Information

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BAC

Clone NameMSMg01-340C15
Chromosome7 (Build37)
Map Location 126,669,634 - 126,840,555
singlet/doubletdoublet
Overlap geneC730027J19Rik, Acsm2, Acsm1, BC048390
Upstream geneCoq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik
Downstream geneThumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340C15.T7 (MSMg01no340_c15.b1)MSMg01-340C15.TJ (MSMg01no340_c15.g1)
ACCAG454271AG454272
length720731
length of high quality
(start - end)		615 (47 - 661)550 (78 - 627)
definitionCHROMAT_FILE: MSMg01no340_c15.b1 PHD_FILE: MSMg01no340_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:08 2005CHROMAT_FILE: MSMg01no340_c15.g1 PHD_FILE: MSMg01no340_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,669,634 - 126,670,244)(126,840,111 - 126,840,555)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGGAGCACGTGTACCAGTGTGCCAGTCCCTAACAGGCTGACT
CCAGGCCAAGGTTTATCTTGCAGGCACTGTTTGCCTGGGAAACCCTGGCA
GGGAGCTGCTTTCACCAGCTCACAGTGTCCTGACCCTCTGAAACTTGAAG
CTGCTGACTTCTAACCCTGTTTTCTCCAGGCTGTGCTTGGGGCTAAAGCT
CCCTGTCCCAATCCTGCCTTCATCGCTTCTGGGGAAATCTTCTCAGGAGC
TTTTAGGTCTGCCTTGCTGCTGAAGTGAAACGCAGATGCCTTTTGTGTAC
CTCAGATTTTAAAACAAGGTAACTGAGCAAGAAACCCTTCACTGGCACGT
GCCACCTTCCCAGAGACCTTTGGGGATTAAATCAAGGATAGGAATGGCAC
AATGTGGCCTTAGGAAATTGTCGGGAAAGACCTGAAGGCTGTGGAGGTCA
GCCATCAAGAAGGGAAGAGTCAAAGAAACGGGTGTGTGTGAGGCAGAATA
CAGGAGCGATGTCCGGGAGATCCGAGGCTCTAAACCCGGTGTTAGTGGCT
ACGAGCCAAAGGCTGAACCTAGACTTTTCTGGAAAGTGAGAGTCGGAAGT
AACTGTTTCCCTTCTAAGCCGCCTCCTCTAATGAGGAAAGTAGAATTTGG
GAGAGAGTTGTCACAGGGCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGAAGGAGGCTCTTTTTTTA
CTGTCATCAGTGTTATTGTGGGGAGCTCTCATGCTGTGGTACGCATGTGG
GCAGAGGACACCTTTTGTAATATCAACGCTCTCCTTCCACCTTTAGGTTG
GTCTCATGGACTCAGAAGCTCTGGTGGCCAGACTTGCATAGCAAGCACCT
TTACCTGCAGAGCCATCTTGCCATCCCAAGGCTATTTTACTGACTATATT
TTAACTGAGTTAGCTGAGTTATTCCCTTAAGAAAACACGTTAGAGGGTCT
CAGAACGATCAATTAATATAAAAATATAAAATGATTTCTCTTACAAGTTA
TTTGCTCTTAATGATTCCCAGTTACAGTCTCCGTGGTGGATTTATGAATG
TGTTCAGTAGTAGATTACCACCTTGGGAGTCAGAGGAAGATTTCTTCTAA
TGGGTTTTAGACAGCAAATGTTTGTTGGATGGCAAGTATTTTAGACTTTA
TTGCATATGCCTTCCAGCAAAATCAAATAGTTTGTTATGTGGTGAGTGAA
GGCAATTTTAAAAATTCACATGAAGGGTTTGACATTTTGGGGAATAAAAA
GGTCTGCAGCTGGCTTTCTTCACTTGATGAACTGGTGTAATTGGTTATTT
CATGGTTTTGAACACCAACTTGTGTGGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_c15.b1 MSMg01no340_c15.b1 CHROMAT_FILE:
MSMg01no340_c15.b1 PHD_FILE: MSMg01no340_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:08 2005
         (615 letters)



>mm_chr7_126669430_126670444
          Length = 1015

 Score = 1143 bits (591), Expect = 0.0
 Identities = 606/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggagcacgtgtaccagtgtgccagtccctaacaggctgactccaggccaag 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagggagcacgtgtactagtgtgccagtccctaacaggctgactccaggccaag 264

                                                                       
Query: 65  gtttatcttgcaggcactgtttgcctgggaaaccctggcagggagctgctttcaccagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttatcttgcaggcactgtttgcctgggaaaccctggcagggagctgctttcaccagct 324

                                                                       
Query: 125 cacagtgtcctgaccctctgaaacttgaagctgctgacttctaaccctgttttctccagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagtgtcctgaccctctgaaacttgaagctgctgacttctaaccctgttttctccagg 384

                                                                       
Query: 185 ctgtgcttggggctaaagctccctgtcccaatcctgccttcatcgcttctggggaaatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtgcttggggctaaagctccctgtcccaatcctgccttcatcgcttctggggaaatct 444

                                                                       
Query: 245 tctcaggagcttttaggtctgccttgctgctgaagtgaaacgcagatgccttttgtgtac 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tctcaggagcttttaggtctgccttgctgctgcagtgaaacgcagatgccttttgtgtac 504

                                                                       
Query: 305 ctcagattttaaaacaaggtaactgagcaagaaacccttcactggcacgtgccaccttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 ctcagattttaaaacaaggtaactgagcaagaaacccttcactggcacgtgccacctacc 564

                                                                       
Query: 365 cagagacctttggggattaaatcaaggataggaatggcacaatgtggccttaggaaattg 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 cagagacctttggggattaaatcaaggataggaatggcacaatgtgaccttaggaaattg 624

                                                                       
Query: 425 tcgggaaagacctgaaggctgtggaggtcagccatcaagaagggaagagtcaaagaaacg 484
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaggaaagacctgaaggctgtggaggtcagccatcaagaagggaagagtcaaagaaacg 684

                                                                       
Query: 485 ggtgtgtgtgaggcagaatacaggagcgatgtccgggagatccgaggctctaaacccggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggtgtgtgtgaggcagaatacaggagcgatgtccgggagatccgaggctctaaacccggt 744

                                                                       
Query: 545 gttagtggctacgagccaaaggctgaacctagacttttctggaaagtgagagtcggaagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttagtggctacgagccaaaggctgaacctagacttttctggaaagtgagagtcggaagt 804

                      
Query: 605 aactgtttccc 615
           |||||||||||
Sbjct: 805 aactgtttccc 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_c15.g1 MSMg01no340_c15.g1 CHROMAT_FILE:
MSMg01no340_c15.g1 PHD_FILE: MSMg01no340_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:08 2005
         (550 letters)



>mm_chr7_126839606_126840555
          Length = 950

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 106 ccttccacctttaggttggtctcatggactcagaagctctggtggccagacttgcatagc 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 ccttccacctttaggttggtctcatggactcagaagctctggtggccagacttgcatagc 891

                                                                       
Query: 166 aagcacctttacctgcagagccatcttgccatcccaaggctattttactgactatatttt 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 890 aagcacctttacctgcagagccatcttgccatcccaaggctattttactgagtatatttt 831

                                                                       
Query: 226 aactgagttagctgagttattcccttaagaaaacacgttagagggtctcagaacgatcaa 285
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 830 aactgagttagctgagttattcccttaagaaaacacgttagagagtctcagaacgatcaa 771

                                                                       
Query: 286 ttaatataaaaatataaaatgatttctcttacaagttatttgctcttaatgattcccagt 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttaatataaaaatataaaatgatttctcttacaagttatttgctcttaatgattcccagt 711

                                                                       
Query: 346 tacagtctccgtggtggatttatgaatgtgttcagtagtagattaccaccttgggagtca 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tacagtctccgtggtggatttatgaatgtgttcagtagtagattaccaccttgggagtca 651

                                                                       
Query: 406 gaggaagatttcttctaatgggttttagacagcaaatgtttgttggatggcaagtatttt 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaggaagatttcttctaatgggttttagacagcaaatgtttgttggatggcaagtatttt 591

                                                                       
Query: 466 agactttattgcatatgccttccagcaaaatcaaatagtttgttatgtggtgagtgaagg 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agactttattgcatatgccttccagcaaaatcaaatagtttgttatgtggtgagtgaagg 531

                                    
Query: 526 caattttaaaaattcacatgaaggg 550
           |||||||||||||||||||||||||
Sbjct: 530 caattttaaaaattcacatgaaggg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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