Query= MSMg01no340_j05.b1 MSMg01no340_j05.b1 CHROMAT_FILE:
MSMg01no340_j05.b1 PHD_FILE: MSMg01no340_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:36 2005
(618 letters)
>mm_chr7_38529404_38530421
Length = 1018
Score = 1141 bits (590), Expect = 0.0
Identities = 602/609 (98%), Gaps = 6/609 (0%)
Strand = Plus / Plus
Query: 13 ggaattctgtgagtcgttcca---atactctgtacacatctgtaagttgaagggagagat 69
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattctgtgagtcg---caggaatactctgtacacatctgtaagttgaagggagagat 269
Query: 70 ataaatggggggccggagagaaagttaggcttagagggagcaaagaagaaaatgtccaaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ataaatggggggccggagagaaagttaggcttagagggagcaaagaagaaaatgtccaaa 329
Query: 130 aggaaggaagtagaggcagccaccagctccccactccccagccccagctcgcaggctatg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggaaggaagtagaggcagccaccagctccccactccccagccccagctcgcaggctatg 389
Query: 190 agctttgcgggtccgagagccatggcaagggaggccacaggcttcagcatttcctaccct 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agctttgcgggtccgagagccatggcaagggaggccacaggcttcagcatttcctaccct 449
Query: 250 gtccagcctctccagaagagctttctgtaaatctttcaaccacgcacacatcttctccca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtccagcctctccagaagagctttctgtaaatctttcaaccacgcacacatcttctccca 509
Query: 310 tgacaggggccgtgcagacggagacctgcaccctacaatcactgatgaaatttgtattga 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgacaggggccgtgcagacggagacctgcaccctacaatcactgatgaaatttgtattga 569
Query: 370 ctccaaaatcaaaagtaatgagaagaaaattggttcacagcctgacccgacagttccaga 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ctccaaaatcaaaagtaatgagaagaaaattggttcacagcctgacccgacagttccaga 629
Query: 430 ctgctgtattgaagttgcaaaaagacattttttttattgtctccagatttcaattaacga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctgctgtattgaagttgcaaaaagacattttttttattgtctccagatttcaattaacga 689
Query: 490 catcgagccgccccatcctcccattattagtttgaacagaagatcagatttaagaagttt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 catcgagccgccccatcctcccattattagtttgaacagaagatcagatttaagaagttt 749
Query: 550 cactaaattaattactgtaatagtatcttgcctttctggaaaccctctgtggntggtaaa 609
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 750 cactaaattaattactgtaatagtatcttgcctttctggaaaccctctgtggttggtaaa 809
Query: 610 gggaagaca 618
|||||||||
Sbjct: 810 gggaagaca 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_j05.g1 MSMg01no340_j05.g1 CHROMAT_FILE:
MSMg01no340_j05.g1 PHD_FILE: MSMg01no340_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:36 2005
(603 letters)
>mm_chr7_38725230_38726232
Length = 1003
Score = 775 bits (401), Expect = 0.0
Identities = 401/401 (100%)
Strand = Plus / Minus
Query: 1 tctgtgcctcccttcctccttctgtcctcttccctgaccatgtctgtccttctgcatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctgtgcctcccttcctccttctgtcctcttccctgaccatgtctgtccttctgcatttg 342
Query: 61 ccaaggattgctttgtggcctatcacgtgatcagtctctgacagccagatggagtaacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccaaggattgctttgtggcctatcacgtgatcagtctctgacagccagatggagtaacct 282
Query: 121 atagatagatatctgtccattcagttggtctgtggtatattagctccggaatttctttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atagatagatatctgtccattcagttggtctgtggtatattagctccggaatttctttgt 222
Query: 181 tgcatttggaagactctatcggttgctgttcccattgctgcgataaaatgccccggcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgcatttggaagactctatcggttgctgttcccattgctgcgataaaatgccccggcagt 162
Query: 241 agcaacctcaggggaataaggtttgctttggctcatagttctagggtagagcccatcatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agcaacctcaggggaataaggtttgctttggctcatagttctagggtagagcccatcatg 102
Query: 301 gcagggactctgtggcagcaggcgcctgaggcagcaggtaacgttgcatccctggtcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gcagggactctgtggcagcaggcgcctgaggcagcaggtaacgttgcatccctggtcagg 42
Query: 361 gaacagagggagagaaatgtttgtgcttaagtagctttcta 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gaacagagggagagaaatgtttgtgcttaagtagctttcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
