BAC Information

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BAC

Clone NameMSMg01-340P24
Chromosome7 (Build37)
Map Location 114,218,392 - 114,218,881
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714
Downstream geneOlfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340P24.T7 (MSMg01no340_p24.b1)MSMg01-340P24.TJ (MSMg01no340_p24.g1)
ACCAG454904AG454905
length742747
length of high quality
(start - end)		489 (67 - 555)465 (80 - 544)
definitionCHROMAT_FILE: MSMg01no340_p24.b1 PHD_FILE: MSMg01no340_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:07 2005CHROMAT_FILE: MSMg01no340_p24.g1 PHD_FILE: MSMg01no340_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCAATGTTGGTTTTGGAAATGTCTATAGAAGAAA
AAAACCGACTAATGTAGTTTAGACGTATTATTGCGATCTACACAAAATCT
ACTCTATTTGCTAACTATATACTCAAAAAACTGTATCTTTAACTGTGTTA
TTTAGTTTCTATTCATAGTCATGAACTTAACTCTTAAACCACCTACCTAG
ACTTTGAGGTGAATAAAGAACAAAAGGAACCCAGAGAACCATAGTGAGAT
GAATCATGAGTAGTGTGGACGATTGAGATGGCACTCTTTTGAAGGATTGA
GTGGTGGTTAAGATATCCACAGGGCAGAGGTATTAGGGCCGCCTACGATG
ACATTCTTGTCATTCCAAGTTTGTCATGCTTCCAAACTGTCCATGCTTTT
CACCTTTCCAATGAACACATATTTGTCATCCATCCATTTTCATCATGGTA
AGGCAGATAAAACTTGGAACTATTTGTGTTTGATCCAGAATTCTCTATGG
ACAAAATACCCAGGCCTATATGCTTCAGGATGAAGTTATCAACTTCAGAT
TTCTCCCTGTTGATGGACTTGCTGACAGTGTGAGTATGGTGTGTGCAGTA
CCACCTTGCTGGATGAACTTGGAACAATTCTGTGAATAAGGAAAGCTTTT
TAACCAGTCCTTCTCTTAAAGGCTCCGAGAAGAAAGAATTTC

NNNNCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATAAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
ANATGTGGTACATCTACACAATGGAGTACTACTCAGCTACTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGNATATAAGCCCCCATCCTAGGATTACCCAGATATAAGAATACA
TTTGGCTAACCTATGGAACTCCCAAAAAAGGAAGAAGGAAATGGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_p24.b1 MSMg01no340_p24.b1 CHROMAT_FILE:
MSMg01no340_p24.b1 PHD_FILE: MSMg01no340_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
         (489 letters)



>mm_chr7_114218192_114219081
          Length = 890

 Score =  893 bits (462), Expect = 0.0
 Identities = 483/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaatgttggttttggaaatgtctatagaag-aaaaaaaccgactaatgtagtttagacg 59
           ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| 
Sbjct: 201 ccaatgttggttttggagatgtctatagaagaaaaaaaaacgactaatgtagtttagaca 260

                                                                       
Query: 60  tattattgcgatctacacaaaatctactctatttgctaactatatactcaaaaaactgta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattattgcgatctacacaaaatctactctatttgctaactatatactcaaaaaactgta 320

                                                                       
Query: 120 tctttaactgtgttatttagtttctattcatagtcatgaacttaactcttaaaccaccta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttaactgtgttatttagtttctattcatagtcatgaacttaactcttaaaccaccta 380

                                                                       
Query: 180 cctagactttgaggtgaataaagaacaaaaggaacccagagaaccatagtgagatgaatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagactttgaggtgaataaagaacaaaaggaacccagagaaccatagtgagatgaatc 440

                                                                       
Query: 240 atgagtagtgtggacgattgagatggcactcttttgaaggattgagtggtggttaagata 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagtagtgtggatgattgagatggcactcttttgaaggattgagtggtggttaagata 500

                                                                       
Query: 300 tccacagggcagaggtattagggccgcctacgatgacattcttgtcattccaagtttgtc 359
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tccacagggcagaggtattagggccgcccacgatgacattcttgtcattccaagtttgtc 560

                                                                       
Query: 360 atgcttccaaactgtccatgcttttcacctttccaatgaacacatatttgtcatccatcc 419
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 atgcttccaaactgtccatgcttttcacctttccaatgaacacatttttgtcatccatcc 620

                                                                       
Query: 420 attttcatcatggtaaggcagataaaacttggaactatttgtgtttgatccagaattctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttcatcatggtaaggcagataaaacttggaactatttgtgtttgatccagaattctc 680

                     
Query: 480 tatggacaaa 489
           ||||||||||
Sbjct: 681 tatggacaaa 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space:   421520
Effective search space used:   421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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