BAC Information

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BAC

Clone NameMSMg01-341B16
Chromosome7 (Build37)
Map Location 114,218,147 - 114,218,609
singlet/doubletsinglet
Overlap geneOlfr714
Upstream geneEG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713
Downstream geneOlfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341B16.T7 (MSMg01no341_b16.b1)MSMg01-341B16.TJ (MSMg01no341_b16.g1)
ACCAG454983AG454984
length730742
length of high quality
(start - end)		---462 (76 - 537)
definitionCHROMAT_FILE: MSMg01no341_b16.b1 PHD_FILE: MSMg01no341_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:15 2005CHROMAT_FILE: MSMg01no341_b16.g1 PHD_FILE: MSMg01no341_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCTATCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGGAATTCATGGAATCTAACAGGGGAAACTCCACCATT
AAAATTTAATTGGAAGGTTTTAAGGGCCCAAAAATTTTTTCCCCCTTTCT
TCCGGTGGGGAAACCTTGGTGGGAATTTACAATCTCTTTTTGGGCAAAAG
GGGGGTATAAACCCCCTTTTCCCCAGGGGGACTCTTCCCACCGGCCCCCC
AATTTAAAAATTTTGGCGCGGGGGGCGTCTTTTAAAAAGGCCAAAAAAAA
AAATAGGGGTTCTCAAAAAAGGGGGGGGTTTTTTTTTGTTATACCTATCC
CCCCCCCCCCGGGGGGGGGAAGAGGAAATCTCCCTCTTTCCCTTCCTTTG
CGCCGGTTTCCTCCTTCTTATAAAAAAACCCCCTCCCCTATACATAACTG
GTGTGTGGTGTGTGTGGTATACCTATCCCTTCCTCCCCCATCACATTTTT
TCCCCCCCTTTTCTTTTTGTGGTTCCTTCCTCCCGCCCTTCCCCACATAC
AAACAAGCCTTCCCCTTCTTTTTTCTCTTTTCCTCCCCCTTTTCCCCCCT
TTTTTTCCTCTTTTCTTTATCCCCCTTTTCCTCTTTNTTTTTTCTTTNTC
TTTTCCCNNTTTTTCTTTTTCCCCTTTTTATATGCCGTTATTTTATTTTT
TCCCTCCTTTTTTTTGCCGCTGGTGGGGCG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTGAAAGCAAGAAATTGTTATCA
CTGTCCTACACTGTTGTGACTCCTCTGTTGAACCCCATTATCTATAGTCT
GAGAAATAATGAAGTGAAGAATGCACTCAGCAGAACTTTCCACAAGGCCC
TGGCCCTCAGAAAATTTATCCTGTAGATATTAAAAGGTAAGGTTAATATT
TGTTAAATGGAGAGCATATATTTGTGGTTCATATCTACCCATTGATCTCT
ATTGTAATGAATTCCAGCTCCCAATGTTGGTTTTGGAAATGTCTATAGAA
GAAAAAAACCGACTAATGTAGTTTAGACGTATTATTGCGATCTACACAAA
ATCTACTCTATTTGCTAACTATATACTCAAAAAACTGTATCTTTAACTGT
GTTATTTAGTTTCTATTCATAGTCATGAACTTAACTCTTAAACCACCTAC
CTAGACTTTGAGGTGAATAAAGAACAAAAGGAACCCAGAGAACCATAGTG
AGATGAATCATGAGTAGTGTGGACGATTGAAATGGCACTCTTTTTGAGGA
TTGAGTGGTGGTTAAATATCCCCGGGGAAAAGTATTATGGCCGCCTACGA
TGAATTTCTTGTCTTCCAAGTTTGCCACGGTTTCAACACTTCCATGCTTT
TTACCTTTCCCATGAAAACAAATTTGTCCTCCCCCCATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_b16.g1 MSMg01no341_b16.g1 CHROMAT_FILE:
MSMg01no341_b16.g1 PHD_FILE: MSMg01no341_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:16 2005
         (462 letters)



>mm_chr7_114217947_114218809
          Length = 863

 Score =  849 bits (439), Expect = 0.0
 Identities = 457/463 (98%), Gaps = 1/463 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgaaagcaagaaattgttatcactgtcctacactgttgtgactcctctgttgaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgaaagcaagaaattgttatcactgtcctacactgttgtgactcctctgttgaaccc 260

                                                                       
Query: 61  cattatctatagtctgagaaataatgaagtgaagaatgcactcagcagaactttccacaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cattatctatagtctgagaaataatgaagtgaaaaatgcactcagcagaactttccacaa 320

                                                                       
Query: 121 ggccctggccctcagaaaatttatcctgtagatattaaaaggtaaggttaatatttgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccctggccctcagaaaatttatcctgtagatattaaaaggtaaggttaatatttgtta 380

                                                                       
Query: 181 aatggagagcatatatttgtggttcatatctacccattgatctctattgtaatgaattcc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggagagcatatatttgttgttcatatctacccattgatctctattgtaatgaattcc 440

                                                                       
Query: 241 agctcccaatgttggttttggaaatgtctatagaagaaaaaaac-cgactaatgtagttt 299
           |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||
Sbjct: 441 agctcccaatgttggttttggagatgtctatagaagaaaaaaaaacgactaatgtagttt 500

                                                                       
Query: 300 agacgtattattgcgatctacacaaaatctactctatttgctaactatatactcaaaaaa 359
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacatattattgcgatctacacaaaatctactctatttgctaactatatactcaaaaaa 560

                                                                       
Query: 360 ctgtatctttaactgtgttatttagtttctattcatagtcatgaacttaactcttaaacc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtatctttaactgtgttatttagtttctattcatagtcatgaacttaactcttaaacc 620

                                                      
Query: 420 acctacctagactttgaggtgaataaagaacaaaaggaaccca 462
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctacctagactttgaggtgaataaagaacaaaaggaaccca 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space:   385556
Effective search space used:   385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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