BAC Information

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BAC

Clone NameMSMg01-341D14
Chromosome7 (Build37)
Map Location 95,624,067 - 95,624,573
singlet/doubletsinglet
Overlap geneRab38
Upstream geneTyr, Grm5, Ctsc, LOC100039756
Downstream geneLOC100039924, LOC666598, EG621562, Tmem135, LOC100039969, Fzd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D14.T7 (MSMg01no341_d14.b1)MSMg01-341D14.TJ (MSMg01no341_d14.g1)
ACCAG455073AG455074
length748762
length of high quality
(start - end)
511 (41 - 551)482 (72 - 553)
definitionCHROMAT_FILE: MSMg01no341_d14.b1 PHD_FILE: MSMg01no341_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:25 2005CHROMAT_FILE: MSMg01no341_d14.g1 PHD_FILE: MSMg01no341_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGGATATAAACCTTCATGTGTGCTCTTCATGTTGCTGTGAATGGGCAA
AGCATCTACATAGAGAGTTGGAATAAGAAGGATCAAGTCAGAGATGTGTA
GTTGATCTATACCCAGGGAGGGATATAAGACTAAATTAGACAGAGGCTAT
AATGAGTACTCAAACCTCCAGCACATCCTATGATCTAACTCAGCTGGGCC
TTAGCTAAGCAAGGGAGTCAGTGGAGATGAGACATGAGAGACATGTTTGG
CACTCACTCAAGTAGCATGTACTCACTCAATAGTCATTCTGAGCCAATAC
ACTTTTATAAGCTGATAATAAGGATGAGGTGTGAGCAAAATTATACTTTA
ATTAAAATAATGAGGAGACAACCTGGCAGGGGAAAGAAGGGTAACTTTTA
ATGGAAAGGAACTAGAGTCATGAAGCCTCAGAGCTTATGTAGGGGGAGAA
TGTCTGAAGAATGAAAGCACACCCTGTCTTACATCATTTCTAAACACAGA
ATAAGATCCGTAGTCTAAGTCAACAATCACAGATGCAGATATAGCGTGAG
ACAAAATATATCTGATCTGATGAAAAGCTCAATGATTATTTCCTGACTAT
AAGATCATTCCATTCAGCGATCTGGCATTTCCAGGTTGGGAATATCCCTT
TTTCCATTCCCAATTTTTTGATGGCGAAGGTGATTCTGATTTCCCCTC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAACTTAT
AGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGGAAAAAT
TCCTAAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAA
TGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGCCACCATGAA
TAAGACAGAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCA
AATCGGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTG
GACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAGCTGAAC
AAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGA
GATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCCGAAAATTGGACATAGTACTAACCGAGGATCCCGCAATACCCCTTCCT
GGGCTATATTCCCAAAAAAGTCCCAACCCGGTTGAAGAACACATGGCCTC
CTCAGGTTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d14.b1 MSMg01no341_d14.b1 CHROMAT_FILE:
MSMg01no341_d14.b1 PHD_FILE: MSMg01no341_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:25 2005
         (511 letters)



>mm_chr7_95623863_95624773
          Length = 911

 Score =  890 bits (460), Expect = 0.0
 Identities = 496/508 (97%), Gaps = 2/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaggatataaaccttcatgtgtgctcttcatgttgctgtgaatgggcaaagca 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattccaaggatataaaccttcatgtgtgctcttcatgttgctatgaatgggcaaagca 264

                                                                       
Query: 65  tctacatagagagttggaataagaaggatcaagtcagagatgtgtagttgatctataccc 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 tctacatagagagttggaataagaatgatcaagtcagagatgtgtagttgatctataccc 324

                                                                       
Query: 125 agggagggatataagactaaattagacagaggctataatgagtactcaaacctccagcac 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 agggagggatataagactaaattagacagaggctataatgagtactcaaacctctagcac 384

                                                                       
Query: 185 atcctatgatctaactcagctgggccttagctaagcaagggagtcagtggagatgagaca 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 atcctatgatctaactcagctgggccttagctaagcaagggaggcagtggagatgagaca 444

                                                                       
Query: 245 tgagagacatgtttggcactcactcaagtagcatgtactcactcaatagtcattctgagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagagacatgtttggcactcactcaagtagcatgtactcactcaatagtcattctgagc 504

                                                                       
Query: 305 caatacacttttataagctgataataaggatgaggtgtgagcaaaattatactttaatta 364
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 505 caatacacttttataagctgatagtaaggatgaggtgtgaacaaaattatactttaatta 564

                                                                       
Query: 365 aaataatgaggagacaacctggcaggggaaagaagggtaacttttaatggaaaggaacta 424
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 565 aaataatgaggagacaacctggcagaggaaagaagggtgacttttaatggaaaggaacta 624

                                                                       
Query: 425 gag-tcatgaagcctcagagcttatgtagggggagaatgtctgaagaatgaaagcacacc 483
           ||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 625 gaggt-atgaagcctcagagcttatgtaggggaagaatgtctgaagaatgaaagcgcacc 683

                                       
Query: 484 ctgtcttacatcatttctaaacacagaa 511
           ||||||||||||||||||||||||||||
Sbjct: 684 ctgtcttacatcatttctaaacacagaa 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)