BAC Information

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BAC

Clone NameMSMg01-341O14
Chromosome7 (Build37)
Map Location 46,831,766 - 46,832,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208
Downstream geneLOC100039133, LOC100039050, EG668540, 4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341O14.T7 (MSMg01no341_o14.b1)MSMg01-341O14.TJ (MSMg01no341_o14.g1)
ACCAG455590AG455591
length778762
length of high quality
(start - end)		486 (37 - 522)366 (74 - 439)
definitionCHROMAT_FILE: MSMg01no341_o14.b1 PHD_FILE: MSMg01no341_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:17 2005CHROMAT_FILE: MSMg01no341_o14.g1 PHD_FILE: MSMg01no341_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCATTCCTGAGATTATTAGTCAAATCCTTTATGATGGACCAGGATTTACT
TCTATTTCTGCTACTAAGTACTTTTATGACCTCATTTAAGGCTTTCTTTC
TTATGAGTAAAAAAGTATGTAGGTTTAGCTGGTGTTGAAGCAAGAAGGTT
GATAAGAGTAATTAGTATAATAAATTTTAAAAGTTGTATTTTATTATGCT
GAAGGTCATTACACAAGGTTCTTACCCTAAATTCCTAACTGCAGTACTAG
TTGTATCTCCTGAAGGATACTAACCCATGTGATTTATCTTAGCTGAAGGT
CAGGTCCAGTCTCTAATAGAAGGGTTGAAATCTTGGGGGTAAACACTCCA
GATGCAGTGCAGATCAAGGTGGCATCTTTCCAGCTTTGTAGAGCAGAGCA
CATTTTGGTCTCTATTTATAAACTTTCCAGTGGGCATCCTGGAGTTCTAG
GACTGTGTCTGGTTATCTCCAGTGATGTTTCTGGGCTCTGGGTATCATAT
GTAGCCTTGGTTGGCGCGGAGTTTCCCTAGTAACCTGGCCCTCCTTTTTC
TTTTTTACTTTTCTTCCTGCTACGTGCTTTCTTTTTGCCCTCCGTAAATC
CCGGACGTTCTGCCATTCTGTCTTTCCTCTTTCTTCCCACCCCTTTCTTT
TTCCTCCTATTCCCCCTTCTCCCCTCATTTTCTCCTCCTCATTCACTTAG
CGTCCCTATTACCCCCCATTTTCGACCT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGAGTCACTATTTAGGGAATTTGCA
CCTAGGTAGAAATGCCCATAATCACAGGTATTTAGCATGACTACAAATAG
CGTTCTGAACATCGTAAAGAAGTTGATCATTTTTTAAATTATCCCTAACA
ATTTAAAATGAAATGGCAATTTCTTAATTAAAGCTCTTTTAGTACGAGAT
AACACTTTAAAACATAGAGACTAAAAACTTACTTTTTCTTTGATCATTAC
ATGGGTATTATAGAACACAACAGGGTATTTTGTTTTGTTTTGTTTGTTTG
TTTGTTTTGCTATATGATTCAGCTTACCAAAATAGGTATAGCTTAACAGT
GCTAGTAAAAACAAGGAGGTCAGCACTATATCTTTAAATCAGCTTCTGTT
AGGCTGATTAGACCTTTAGACATTATTTTAATACCCTGATTTTCATTTTT
TCTAAATTCGGGATACCCTTTTAAATTTCGCTTTCTCGTACAATGCACCT
AGCCATTGGGCCCCTGTTTTACTTAAAGGGTTATTATTTTTCCTGAGAGA
CTCATGGCGGTGCCTCCTCCTTCTTGCCCTTTCCTCCTTCCCGCTTTTAT
CATTATATCCCCGCTATGCGTATTATCGTCTGATCTTTACCTTATCTATC
CCCCTTCCTTCCAGTTCTCATAGCTCTCGTCTTTTTTTTTTTTTGCCCCC
GTCTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_o14.g1 MSMg01no341_o14.g1 CHROMAT_FILE:
MSMg01no341_o14.g1 PHD_FILE: MSMg01no341_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:17 2005
         (366 letters)



>mm_chr7_46831373_46832138
          Length = 766

 Score =  708 bits (366), Expect = 0.0
 Identities = 366/366 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagtcactatttagggaatttgcacctaggtagaaatgcccataatcacaggtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcagagtcactatttagggaatttgcacctaggtagaaatgcccataatcacaggtattt 700

                                                                       
Query: 61  agcatgactacaaatagcgttctgaacatcgtaaagaagttgatcattttttaaattatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agcatgactacaaatagcgttctgaacatcgtaaagaagttgatcattttttaaattatc 640

                                                                       
Query: 121 cctaacaatttaaaatgaaatggcaatttcttaattaaagctcttttagtacgagataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cctaacaatttaaaatgaaatggcaatttcttaattaaagctcttttagtacgagataac 580

                                                                       
Query: 181 actttaaaacatagagactaaaaacttactttttctttgatcattacatgggtattatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actttaaaacatagagactaaaaacttactttttctttgatcattacatgggtattatag 520

                                                                       
Query: 241 aacacaacagggtattttgttttgttttgtttgtttgtttgttttgctatatgattcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aacacaacagggtattttgttttgttttgtttgtttgtttgttttgctatatgattcagc 460

                                                                       
Query: 301 ttaccaaaataggtatagcttaacagtgctagtaaaaacaaggaggtcagcactatatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttaccaaaataggtatagcttaacagtgctagtaaaaacaaggaggtcagcactatatct 400

                 
Query: 361 ttaaat 366
           ||||||
Sbjct: 399 ttaaat 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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