BAC Information

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BAC

Clone NameMSMg01-342D22
Chromosome7 (Build37)
Map Location 106,059,168 - 106,059,561
singlet/doubletsinglet
Overlap geneUvrag
Upstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, EG666529
Downstream geneDgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342D22.T7 (MSMg01no342_d22.b1)MSMg01-342D22.TJ (MSMg01no342_d22.g1)
ACCAG455844AG455845
length964746
length of high quality
(start - end)		---408 (64 - 471)
definitionCHROMAT_FILE: MSMg01no342_d22.b1 PHD_FILE: MSMg01no342_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:43 2005CHROMAT_FILE: MSMg01no342_d22.g1 PHD_FILE: MSMg01no342_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTGATAGAAGAGTTCCAAAGATCCGCGGAAATTCTGGGAATTGCTACNA
TGTTTCTGATTAACGAAGGGAAATANNAGGNCTGGGAAAGTNCTAANGGN
NAAAAAAAAACCGCTTTTGTCCACCATGGTTTTCCCCAAGGGAAANGGTT
AAAATGTGAAATGGAATTGAAAACAGGNAAGAAGGGGGGGCCCACATTTT
GGGGCCCCCCGGTTAATTTTGGGGAGAGGAGCGGGGGAAAACGTTTAAAA
CCCTGAAAAGGTACACAGGGTCTTTTTGAAGAAAAGGCGAAATTTCTCAA
AAAAAAAAAAAATTTTTGGGAAACAAAAGAATTCAAAAAAACCCCGGGGG
GGCCTTTTTTGTTTTTGGGGCCCCCCAACAATTTTCCCCCACCCCCTCCC
CCCCGGGGGGGGGCGGCCACAACCACCCTGGGGGGGGTGGGCTTTGGGGG
AATTTTTTTTTATATTTNTTTCACCCCCNCCCNNCCCCACACANNNNNNN
ACCCCTTTTTTTAATAACCCCCCTTGTCCTTCTTTTTTTGAATTNNNNTT
GTTCTATACACCCNTTTTTTNTNNNCNCTTCCTTTNTTTTTTTTTTTTTT
TNNTNNTNGCGTTCNTTTTTNNNNCCNNCCANNNTNNNNNTTNNCCCNCC
TTTTTTTTTTGTATTATTAACTTTTTTTTTTTTTTTTTTCCTCCCTTTTT
CCTTCCCNNNNTTTNTNNTTTTTNNNNCNTTCTTTNNNNAATACCNCNNC
CNCNNANNNNCCCTTTTNTCCCCTTTNNNNCCCCNNNNTNTCTTTNNNCN
CCTNNTNTNCCTCCCCNNCCCTCTCCCNNCCCCTTTTTNNTTTTNTCNCN
NTCTCTTTTTTTTCCTTCTTTCCCCCNTNNCTTTTTTTTNTTAANNNNNN
GTNTATNANNNCATANNNNNNNNNCCTCCNNATCCCACACATCCACGCAC
GACTATAACAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTTTTCATATCCAAGCACTCAATCTGAGTTTTAATT
TTTAAACACAACTTTTCTAGGTCAAGAAAGACTCTGGGGTTTAGGAATCA
TTTTGTCATTTAGGTTTTGGCAGAAGAGAAATTCACTTTAGACAACAAAC
ACACACACACACACACACACACACACACACACACGCACGCACGCACGCAC
GCACGCACATGTGCACGCGCGTGCACACACACGGCTAGTTATTGCATGGT
TTATTAGCTCCACATGGGGCTTGAGCGGAGCTGCATGAGATGGCTGATAC
AAACCGTCTGTTACCGTGAGGGAATGTGGATTAATATGTGGCTTCAATAA
AGGTTACTAAAAGATCAACACTTCGTGATGGGATTACAGTGAAGCTGACT
ACAAAGAGAACTGGTCTGCAGAAACTGAGAGCAAGAAATTAAAAATGTAC
ATATGCATCAAAGACGTAACTTCAGAAGGCTTATGGAGGTTAAAATTTCT
ATAGGATTATTTTCTAGGATTTCCACTCAGACCAAATATTGGGGGCCCCC
TACCTTTGAAAGAGTTGATCCTGAGGTCTTAAAAAGGGCCTGCCCTGGTC
AAACCGGCCTTTTTTTAAGGAAATAAACTCCTTCCAAAATGGGAATGGCG
GGCTTTATAATCTAAATGGGCAGGACCCTCCTCTCCATAAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_d22.g1 MSMg01no342_d22.g1 CHROMAT_FILE:
MSMg01no342_d22.g1 PHD_FILE: MSMg01no342_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:43 2005
         (408 letters)



>mm_chr7_106058968_106059775
          Length = 808

 Score =  677 bits (350), Expect = 0.0
 Identities = 388/410 (94%), Gaps = 18/410 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttcatatccaagcactcaatctgagttttaatttttaaacacaacttttctaggtc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttcatatccaagcactcagtctgagttttaatttttaaacacaacttttctaggtc 260

                                                                       
Query: 61  aagaaagactctggggtttaggaatcattttgtcatttaggttttggcagaagagaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaagactctggggtttaggaatcattttgtcatttaggttttggcagaagagaaatt 320

                                                                       
Query: 121 cactttagacaacaaacacacacacacacacacacacacacacacacacacgcacgcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 321 cactttagacaacaaacacacacacacacacacacacacacacacacaca---------- 370

                                                                       
Query: 181 cacgcacgcacgcacatgtgcacgcgcgtgcacacaca--cggctagttattgcatggtt 238
           ||  ||| ||||||||||||||||||||||    ||||  ||||||||||||||||||||
Sbjct: 371 ca--cacacacgcacatgtgcacgcgcgtg----cacatgcggctagttattgcatggtt 424

                                                                       
Query: 239 tattagctccacatggggcttgagcggagctgcatgagatggctgatacaaaccgtctgt 298
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 425 tattagctccacatggggcttgagcggagctgcacgagatggctgatacaaaccgtctgt 484

                                                                       
Query: 299 taccgtgagggaatgtggattaatatgtggcttcaataaaggttactaaaagatcaacac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taccgtgagggaatgtggattaatatgtggcttcaataaaggttactaaaagatcaacac 544

                                                             
Query: 359 ttcgtgatgggattacagtgaagctgactacaaagagaactggtctgcag 408
           |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 545 ttcgtgatgggattacagtgaagctgactacaaagagaactggtttgcag 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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