MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-342H08
Chromosome	7 (Build37)
Map Location	85,855,216 - 85,855,399
singlet/doublet	singlet
Overlap gene	none
Upstream gene	A330068G13Rik, Ntrk3
Downstream gene	Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	A330068G13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:414087 MGI:3041176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 1 Protein

name	Ntrk3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18213 MGI:97385
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Mrpl46 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67308 MGI:1914558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrps11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67994 MGI:1915244
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Det1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76375 MGI:1923625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Isg20l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68048 MGI:1915298
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Isg20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57444 MGI:1928895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acan (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11595 MGI:99602
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hapln3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67666 MGI:1914916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mfge8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17304 MGI:102768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Abhd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54608 MGI:1914344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rlbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19771 MGI:97930
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC025462 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208836 MGI:2384790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Polg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18975 MGI:1196389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI854517 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:101694 MGI:2142071
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs

name	Rhcg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56315 MGI:1888517
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730590G19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77011 MGI:1924261
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ntrk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33413411 GeneID:18213 MGI:97385
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurotrophic tyrosine kinase, receptor, type 3 transcript_id : NM_008746.4

name	Ntrk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33413428 GeneID:18213 MGI:97385
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurotrophic tyrosine kinase, receptor, type 3 transcript_id : NM_182809.1

name	Mrpl46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476182 GeneID:67308 MGI:1914558
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L46 transcript_id : NM_023331.2

name	Mrps11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17157978 GeneID:67994 MGI:1915244
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein S11 transcript_id : NM_026498.1

name	Det1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130619 GeneID:76375 MGI:1923625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : de-etiolated homolog 1 (Arabidopsis) transcript_id : NM_029585.3

name	Isg20l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142358361 GeneID:68048 MGI:1915298
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon stimulated exonuclease gene 20-like 1 transcript_id : NM_026531.3

name	Isg20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981452 GeneID:57444 MGI:1928895
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interferon-stimulated protein transcript_id : NM_020583.4

name	Acan (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116875857 GeneID:11595 MGI:99602
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aggrecan transcript_id : NM_007424.2

name	Hapln3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982255 GeneID:67666 MGI:1914916
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hyaluronan and proteoglycan link protein 3 transcript_id : NM_178255.3

name	Mfge8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865976 GeneID:17304 MGI:102768
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : milk fat globule-EGF factor 8 protein transcript_id : NM_001045489.1

name	Mfge8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865978 GeneID:17304 MGI:102768
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : milk fat globule-EGF factor 8 protein transcript_id : NM_008594.2

name	Abhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802583 GeneID:54608 MGI:1914344
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : abhydrolase domain containing 2 transcript_id : NM_018811.5

name	Rlbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10181109 GeneID:19771 MGI:97930
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinaldehyde binding protein 1 transcript_id : NM_020599.1

name	BC025462 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126722699 GeneID:208836 MGI:2384790
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC025462 transcript_id : NM_145946.2

name	Polg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87080814 GeneID:18975 MGI:1196389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (DNA directed), gamma transcript_id : NM_017462.2

name	AI854517 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94380588 GeneID:101694 MGI:2142071
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 ESTs product : expressed sequence AI854517 transcript_id : XM_979851.1

name	Rhcg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803521 GeneID:56315 MGI:1888517
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rhesus blood group-associated C glycoprotein transcript_id : NM_019799.2

name	5730590G19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78354982 GeneID:77011 MGI:1924261
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730590G19 gene transcript_id : NM_029835.1

name	Ntrk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33413412 CCDS:CCDS21371.1 GeneID:18213 MGI:97385
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA] GO_process : GO:0042490 - mechanoreceptor differentiation [Evidence IMP]; GO:0048691 - positive regulation of axon extension involved in regeneration [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : neurotrophic tyrosine kinase, receptor, type 3 isoform 1 protein_id : NP_032772.3

name	Ntrk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33413429 CCDS:CCDS21372.1 GeneID:18213 MGI:97385
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA] GO_process : GO:0042490 - mechanoreceptor differentiation [Evidence IMP]; GO:0048691 - positive regulation of axon extension involved in regeneration [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA] codon_start : 1 note : non-catalytic isoform 2 is encoded by transcript variant 2 product : neurotrophic tyrosine kinase, receptor, type 3 non-catalytic isoform 2 protein_id : NP_877961.1

name	Mrpl46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963643 CCDS:CCDS21373.1 GeneID:67308 MGI:1914558
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] codon_start : 1 product : mitochondrial ribosomal protein L46 protein_id : NP_075820.1

name	Mrps11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17157979 CCDS:CCDS21374.1 GeneID:67994 MGI:1915244
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mitochondrial ribosomal protein S11 protein_id : NP_080774.1

name	Det1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229232 CCDS:CCDS21375.1 GeneID:76375 MGI:1923625
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : de-etiolated homolog 1 protein_id : NP_083861.1

name	Isg20l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541921 GeneID:68048 MGI:1915298
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA] codon_start : 1 product : interferon stimulated exonuclease gene 20-like 1 protein_id : NP_080807.2

name	Isg20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15805028 CCDS:CCDS21376.1 GeneID:57444 MGI:1928895
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004527 - exonuclease activity [Evidence IEA]; GO:0008859 - exoribonuclease II activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : interferon-stimulated protein protein_id : NP_065608.2

name	Acan (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116875858 CCDS:CCDS21377.1 GeneID:11595 MGI:99602
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0001502 - cartilage condensation [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0030166 - proteoglycan biosynthesis [Evidence IMP] codon_start : 1 product : aggrecan 1 protein_id : NP_031450.2

name	Hapln3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982256 CCDS:CCDS21378.1 GeneID:67666 MGI:1914916
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : link protein 3 product : hyaluronan and proteoglycan link protein 3 precursor protein_id : NP_839986.2

name	Mfge8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865977 GeneID:17304 MGI:102768
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005615 - extracellular space [Evidence IDA]; GO:0019897 - extrinsic to plasma membrane [Evidence IDA] GO_function : GO:0005178 - integrin binding [Evidence IDA]; GO:0008429 - phosphatidylethanolamine binding [Evidence IDA]; GO:0001786 - phosphatidylserine binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007338 - fertilization (sensu Metazoa) [Evidence IEA]; GO:0006911 - phagocytosis, engulfment [Evidence IDA]; GO:0006910 - phagocytosis, recognition [Evidence IDA]; GO:0050766 - positive regulation of phagocytosis [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; milk fat globule glycoprotein product : milk fat globule-EGF factor 8 protein isoform 2 protein_id : NP_001038954.1

name	Mfge8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865979 CCDS:CCDS21379.1 GeneID:17304 MGI:102768
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0005615 - extracellular space [Evidence IDA]; GO:0019897 - extrinsic to plasma membrane [Evidence IDA] GO_function : GO:0005178 - integrin binding [Evidence IDA]; GO:0008429 - phosphatidylethanolamine binding [Evidence IDA]; GO:0001786 - phosphatidylserine binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007338 - fertilization (sensu Metazoa) [Evidence IEA]; GO:0006911 - phagocytosis, engulfment [Evidence IDA]; GO:0006910 - phagocytosis, recognition [Evidence IDA]; GO:0050766 - positive regulation of phagocytosis [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; milk fat globule glycoprotein product : milk fat globule-EGF factor 8 protein isoform 1 protein_id : NP_032620.2

name	Abhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254377 CCDS:CCDS21380.1 GeneID:54608 MGI:1914344
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA] GO_process : GO:0030336 - negative regulation of cell migration [Evidence IMP]; GO:0009611 - response to wounding [Evidence IMP] codon_start : 1 note : lung alpha/beta hydrolase 2 product : alpha/beta hydrolase fold protein protein_id : NP_061281.3

name	Rlbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10181110 GeneID:19771 MGI:97930
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005502 - 11-cis retinal binding [Evidence IDA]; GO:0019841 - retinol binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0050896 - response to stimulus [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : retinaldehyde-binding protein 1 product : retinaldehyde binding protein 1 protein_id : NP_065624.1

name	BC025462 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126722700 GeneID:208836 MGI:2384790
definition	codon_start : 1 product : hypothetical protein LOC208836 protein_id : NP_666058.2

name	Polg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87080815 CCDS:CCDS21382.1 GeneID:18975 MGI:1196389
definition	GO_component : GO:0005760 - gamma DNA polymerase complex [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS]; GO:0004527 - exonuclease activity [Evidence IDA]; GO:0003895 - gamma DNA-directed DNA polymerase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007568 - aging [Evidence IMP]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006264 - mitochondrial DNA replication [Evidence IMP] codon_start : 1 note : mitochondrial polymerase gamma; polymerase, gamma; Pol gamma; mitochondrial DNA polymerase gamma; mitochondrial DNA polymerase-gamma product : polymerase (DNA directed), gamma protein_id : NP_059490.2

name	AI854517 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94380589 GeneID:101694 MGI:2142071
definition	codon_start : 1 product : hypothetical protein LOC101694 protein_id : XP_984945.1

name	Rhcg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790197 CCDS:CCDS21383.1 GeneID:56315 MGI:1888517
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA] GO_function : GO:0008519 - ammonium transporter activity [Evidence ISS]; GO:0030506 - ankyrin binding [Evidence ISS] GO_process : GO:0015696 - ammonium transport [Evidence ISS] codon_start : 1 exception : mismatches in translation product : Rh type C glycoprotein protein_id : NP_062773.1

name	5730590G19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78354983 CCDS:CCDS21384.1 GeneID:77011 MGI:1924261
definition	codon_start : 1 note : leucine-rich repeat kinase 1 product : hypothetical protein LOC77011 protein_id : NP_084111.1

name	A330068G13Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149257495 GeneID:414087 MGI:3041176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 1 Protein product : RIKEN cDNA A330068G13 gene transcript_id : XR_002354.2

clone name	MSMg01-269C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504H01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-080K23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-501C19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-520J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014L16
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-342H08.T7 (MSMg01no342_h08.b1)	MSMg01-342H08.TJ (MSMg01no342_h08.g1)
ACC	AG456007	AG456008
length	741	635
length of high quality (start - end)	426 (37 - 462)	179 (65 - 243)
definition	CHROMAT_FILE: MSMg01no342_h08.b1 PHD_FILE: MSMg01no342_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:59 2005	CHROMAT_FILE: MSMg01no342_h08.g1 PHD_FILE: MSMg01no342_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:59 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGG ATTCCACTCGAACAGGGCAGGAAGCTGGAGGCAGGAGCTGATGTGGAGGC CCTGGAGGAGTACTGCCTACTGGCTTGCTCAGCCTGCGTTCTTACAGCAC CCAGGACCACAAGCCCAGGGTGGCACTGCCCACAGGAATCTGGGCACTCC CACATCTAGAAAATTCATCCAAGGCTTGTTAACATGCCAGTCTGGTGGGG ACATTCTCTTAACTTTAGTTCCTGCTTCCTAAATGACTTTGGGTTATGTC TAGCCATCACACTATGACAGAGGTCACAGGATGAGGTTTATCAGAATTTC CCAAACCTTCCTGACCCCAATAACCCAGAGACATTAAAAAGTAGTTCTGC CAGGCGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCA GGTGGATTTCTGAGTTACAGGCCAGCCTGATCTACAAAGTGAGTTCCAGG ACAGCCAGTGCTACACACAGAAAACCCTGTCTAAAAACACCACCCCCCCC CACCCCAAAAAAGCAAGATCTGTTCTTAATGTTTGCGTTGAAAACAATGG AATTTGTTTCCTTACCACTGGGGAAAAGACACAACCCTCCAAAAGGGAAT CTTTCACCTTGGTGTCCGGCCAAATTTTTTCCCCGGAATAAATTGTCCAC TCTTTGTAGAAAAAATTCTTCCGCTGCTCTTTAATATTACN	TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXATCAGAAAGTGGTGAATGTCCTTCTTTAGGAATTAG ACAAAAGTTAAAATCAAGTCTAAGGCTATTTATAGCCATCTCTGACACTA CTACCTATTTGAGAAGGAAGCCAATTCAGAATAAAGGAGGAAACCCTGAG AGGATCTTGAGGACATCAGTTAAGGGCCTGGGTCTAGCCATGTCTGAATT TCATGGGGTGAACTGGCCCAGTGATGGAAGGCCAATAAAGTTTCTTCCTT CGGTTTCCACCAAAGGGGGAGTGGGACCCCCTTTTNNNNNNNNNTNNNCC TTCTACCTTTTTTTTCGTGTCTTTTTTTTTTTTTCCCATATCTTTTTTCT TCCTTCCCCCTCTTCTTTTTCCCCCTTTCCCTTTTTTCCCCTTTTCTTCC TCTTTCTTATTTCCCCCCTTTCCCCCTTATTCTACCCTTTTCCCCCACTT CCCTCCTCCTTTTCGGCCCCCCCAATTCTCCGCCCCCCCGCCTACGTTTT TCCCTTTTCGCTTCTCTTTCTCTTTCTCCCCCTCCGCCCCGTTATTATTC ACTTTTTCTTCTCTTTTCTCCTCTTCTCCCTTTCT
quality values	Open. Hide. 18 21 22 22 21 18 12 19 10 9 9 14 17 30 30 39 27 20 20 15 14 9 9 9 12 9 11 11 11 11 11 15 15 23 19 24 28 36 39 39 29 23 23 29 30 30 21 15 6 6 6 6 6 6 9 11 11 26 26 36 30 30 31 33 31 35 36 50 50 50 50 57 57 57 57 57 57 57 59 53 53 53 53 50 50 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 48 48 48 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 57 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 50 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 54 48 48 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 57 57 57 59 59 59 57 57 57 57 53 50 59 59 59 59 30 23 13 11 11 11 11 15 26 32 41 59 59 59 59 50 53 53 53 53 50 57 59 59 59 57 53 53 53 53 53 50 50 50 57 68 68 68 57 57 59 48 42 48 48 54 54 57 57 54 54 54 54 59 59 68 68 68 68 57 57 57 57 57 57 54 54 54 57 57 54 54 57 48 48 43 43 43 43 57 57 57 57 59 59 59 57 43 43 33 25 25 34 34 44 48 48 48 46 59 59 59 47 43 41 37 37 41 37 34 39 39 41 41 41 59 59 59 59 59 59 48 48 48 48 48 48 41 41 41 41 39 39 32 29 25 32 28 34 28 30 30 28 28 34 31 31 35 31 31 34 29 24 28 37 37 28 24 13 10 10 10 9 10 14 14 18 24 21 30 18 17 12 12 12 18 21 21 20 19 16 26 21 25 24 22 22 25 25 37 35 31 26 26 29 19 15 14 10 10 10 10 13 13 12 8 8 8 8 10 8 8 10 10 8 8 11 11 9 16 11 16 12 16 22 28 19 19 9 8 8 8 9 8 8 8 8 8 9 13 14 19 16 10 10 10 7 7 6 6 8 15 21 21 19 14 15 9 8 8 8 8 8 8 8 8 8 8 9 9 9 16 21 14 8 10 10 10 11 12 8 8 8 8 8 13 10 12 10 9 9 9 8 6 8 8 8 8 8 8 13 13 12 7 8 8 8 8 8 8 8 8 8 8 10 10 10 9 8 17 17 13 12 13 15 15 12 11 10 10 13 18 19 18 30 11 12 12 14 14 10 14 11 16 13 13 10 10 11 11 15 12 11 11 11 11 11 10 6 6 6 6 8 8 10 11 11 11 11 11 19 15 13 11 10 8 9 9 12 10 15 11 11 8 8 10 8 8 8 9 8 8 8 8 8 8 6 6 8 8 8 10 8 8 8 8 8 7 11 10 14 12 9 11 11 6 8 6 6 6 6 6 8 8 8 8 8 8 10 10 10 10 13 10 11 11 12 3 0	Open. Hide. 7 7 7 7 8 8 15 21 37 43 44 44 44 44 44 41 41 43 29 27 15 8 8 8 10 8 10 23 21 13 15 15 26 26 50 50 50 27 23 12 12 17 29 24 48 43 40 32 39 33 37 42 42 42 42 59 57 57 47 47 27 22 12 8 9 23 23 50 50 50 42 42 24 19 10 12 18 40 40 47 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 32 32 10 10 10 32 32 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 32 26 16 24 35 42 42 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 32 33 12 12 15 23 17 14 13 24 26 68 68 68 47 53 53 50 50 50 47 47 50 50 50 37 35 35 35 35 35 36 47 44 50 50 50 47 47 33 29 28 22 20 19 26 34 43 41 41 41 44 41 47 39 37 30 25 22 22 22 22 24 15 8 8 8 8 8 14 9 10 10 10 10 11 8 9 9 12 10 10 10 13 17 11 16 11 11 8 8 10 13 12 12 11 13 10 10 10 9 9 9 9 9 8 8 8 8 12 10 10 7 7 7 8 8 8 8 8 9 9 8 8 8 8 8 8 10 9 10 9 10 10 11 14 13 11 11 10 10 7 7 6 6 6 6 11 11 10 10 10 10 3 0 0 0 0 0 0 0 0 0 3 0 0 0 3 10 8 8 8 8 10 8 8 8 8 10 10 12 12 14 10 8 8 8 8 8 8 8 16 16 10 10 9 10 10 12 14 13 10 10 8 10 8 8 8 8 10 9 13 21 28 22 15 10 10 10 10 9 13 13 18 19 16 18 13 12 9 9 8 8 8 8 8 8 15 10 11 10 10 13 8 8 10 10 10 10 10 11 16 25 21 25 15 14 14 12 13 15 19 13 13 15 13 10 10 10 10 12 11 10 10 10 10 10 10 8 8 8 8 8 10 21 18 18 11 12 10 12 9 9 9 9 8 8 8 8 8 8 10 10 13 12 12 11 11 11 12 12 9 10 8 10 10 10 10 11 10 10 8 9 8 8 8 8 8 8 8 10 10 8 8 8 10 10 10 12 10 10 8 8 8 8 8 8 8 8 8 9 11 15 10 10 10 8 8 8 8 8 8 8 8 10 10 10 12 13 18 18 19 15 11 12 8 12 8 10 8 8 8 8 8 8 10 10 8 10 10 10 8 8 8 10 10 10 10 12 19 15 10 6 6 6 6 10 10 8 8 8 8 8 8 8 8 10 11 8 8 8 8 8 8 10 8 12 8 8 11 16 18 19 24 8 8 8 10 8 8 8 8 8 8 8 10 10 10 11 11 13 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no342_h08.g1 MSMg01no342_h08.g1 CHROMAT_FILE:
MSMg01no342_h08.g1 PHD_FILE: MSMg01no342_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:59 2005
         (179 letters)



>mm_chr7_85855016_85855599
          Length = 584

 Score =  310 bits (160), Expect = 5e-89
 Identities = 178/184 (96%), Gaps = 5/184 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagaaagtggt-gaatgtccttctttaggaattag-acaaaagttaaaatcaagtcta 58
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 atcagaaagtggttgaatgtccttctttaggaattagtacaaaagttaaaatcaagtcta 260

                                                                       
Query: 59  aggctatttatagccatctctgacactac-tacctatttgagaaggaagccaattcagaa 117
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aggctatttatagccatctctgacactacatacctatttgagaaggaagccaattcagaa 320

                                                                       
Query: 118 taa-aggag-gaaaccctgagaggatcttgaggacatcagttaagggcctgggtctagcc 175
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 taagaggagtgaaaccctgagaggatcttgaggacatcagttaagggcctgggtctatcc 380

               
Query: 176 atgt 179
           ||||
Sbjct: 381 atgt 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 584
Length adjustment: 8
Effective length of query: 171
Effective length of database: 576
Effective search space:    98496
Effective search space used:    98496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information