BAC Information

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BAC

Clone NameMSMg01-342H17
Chromosome7 (Build37)
Map Location 93,424,156 - 93,424,567
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310
Downstream geneOlfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342H17.T7 (MSMg01no342_h17.b1)MSMg01-342H17.TJ (MSMg01no342_h17.g1)
ACCAG456024AG456025
length635761
length of high quality
(start - end)		---413 (62 - 474)
definitionCHROMAT_FILE: MSMg01no342_h17.b1 PHD_FILE: MSMg01no342_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:01 2005CHROMAT_FILE: MSMg01no342_h17.g1 PHD_FILE: MSMg01no342_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:01 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTGTTCGTATTTCGAGGGATCCGCGGATTCTCCCTGACGATACCGAATGC
AGAGAACACTTGAAAAATGTCANCTCCTTAATCTCAGGGAATGCAATCAA
ACACCCTGAGATTCACTCCACAGTCAGATGCTANATCAAATTCAGTGACA
CAATGCTGCGAGATGTGAGAAGAGAACCTCTCATTGTGTAGATGCAGCTG
TACACATCTGATCATCTGGGTCCTCAAACTGACTNACTTCGAGGTCCGAT
ACTTCCTGGTTTTCCAAAATGCCCCTTTGGAAAAAACTTGCCCCTTGTTT
TACCCTTTTTTATACCAAATTGGAAAACCTTTCCCCCCCCAAAGGAGGGA
AAAAAGGGGGTTCCCCCCCGGGGGACCCTCCTTTATAAAAAAATTTTTTT
TTTCTCCCCCGGGGGGGGCGGGGGCTCCTCTTTGGGGGGACTTTTTTCAA
AAAACCCCTTTTTTTTTTTTGTAGTGTTCCCCCCCCCCCCCCCCACAAAA
TATTTTTTTTCTTCTCCCTACAACAAAAAAAAAGGAGGGGGGTCTCCCCC
CTTTTTTTTATAACCCCCACCACNAAAATTAATCTTTTTTTTTANAAANN
NANACTGCTCTTTCTCCTTCCTTCCCTTTTCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAACTCATTTTTAAGGTTGACCATTTAATGTTTGTGAATA
ATAAATATATTTATCTTTATAACTAGTTTTATGAAGTTTTTTTCACCTCA
AGTTTCGTTACTTTGATTTTAAACTATTAAAGGATTTAATCTTGGTTTTC
TGTTGAAAGCATGTACAATTGAAATGGAATTTACAAAGTCAAGTTTAACA
AGAATGAATATTCTATTTACAAGGTAAGTGTTTTTTTAAAATTATTGCAT
ATCCTTGATCTATTAAGCATAAATTATCTCTTTAAAAAATGAAATGCATG
TGATGTCAATATATTAAAATATATTTCTAGTAAAAGAAAAATATCAAAAC
ACACTAAGGAAAGTCCTCAAAATTCAGTCAGAAAATTCTTTACAAACACA
GGTAGAGAAAATAGATAGGTAGTGGCTCATGCGTTATGCAGAATGGAATT
CAAATTCCAGCACAAGCATAGTAGTTTAGGGCTATCAATAACCCAAGCTC
TTTGGAGATCAACACTCTCTTCTATTCTTTTCTAAGAAAATTTTATTCAG
GTGGATTTCCTATTCCTGGAGGGGAAAACATCCTACCCCTCTATGGTTAA
AAAAAATTCCCTATTATTGATGGTTCCGTAAAACCCCTTATAAAAAAAAA
TCAACCTGTTGGTCAAAAAAGGAGAGGATTTGGGGAGGTTTTTAGGNNNN
AAGATNNNNTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_h17.g1 MSMg01no342_h17.g1 CHROMAT_FILE:
MSMg01no342_h17.g1 PHD_FILE: MSMg01no342_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:01 2005
         (413 letters)



>mm_chr7_93423956_93424767
          Length = 812

 Score =  791 bits (409), Expect = 0.0
 Identities = 412/413 (99%), Gaps = 1/413 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcatttttaaggttgaccatttaatgtttgtgaataataaatatatttatctttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactcatttttaaggttgaccatttaatgtttgtgaataataaatatatttatctttata 260

                                                                       
Query: 61  actagttttatgaagtttttttcacctcaagtttcgttactttgattttaaactattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagttttatgaagtttttttcacctcaagtttcgttactttgattttaaactattaaa 320

                                                                       
Query: 121 ggatttaatcttggttttctgttgaaagcatgtacaattgaaatggaatttacaaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatttaatcttggttttctgttgaaagcatgtacaattgaaatggaatttacaaagtca 380

                                                                       
Query: 181 agtttaacaagaatgaatattctatttacaaggtaagtgtttttttaaaattattgcata 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 agtttaacaagaatgaatattctatttacaaggtaagtgtttttt-aaaattattgcata 439

                                                                       
Query: 241 tccttgatctattaagcataaattatctctttaaaaaatgaaatgcatgtgatgtcaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccttgatctattaagcataaattatctctttaaaaaatgaaatgcatgtgatgtcaata 499

                                                                       
Query: 301 tattaaaatatatttctagtaaaagaaaaatatcaaaacacactaaggaaagtcctcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tattaaaatatatttctagtaaaagaaaaatatcaaaacacactaaggaaagtcctcaaa 559

                                                                
Query: 361 attcagtcagaaaattctttacaaacacaggtagagaaaatagataggtagtg 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attcagtcagaaaattctttacaaacacaggtagagaaaatagataggtagtg 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 812
Length adjustment: 9
Effective length of query: 404
Effective length of database: 803
Effective search space:   324412
Effective search space used:   324412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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