Query= MSMg01no342_k12.b1 MSMg01no342_k12.b1 CHROMAT_FILE:
MSMg01no342_k12.b1 PHD_FILE: MSMg01no342_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:14 2005
(402 letters)
>mm_chr7_114791918_114792719
Length = 802
Score = 739 bits (382), Expect = 0.0
Identities = 397/402 (98%)
Strand = Plus / Plus
Query: 1 gggacctatgcatctgtagttggcaaaattccccctgtggtttctgtaagcatcgaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggacctatgcatctgtagttggcaaaattccccctgtggtttctgtaagcatcgaaagt 260
Query: 61 tgtaaacctttgtgctaacttgtattccctaagcagtgcccgtgttatttgagataatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaacctttgtgctaacttgtattccctaagcagtgcccgtgttatttgagataatgt 320
Query: 121 gttcccagggagagaaacttgtttttagcatgcgaatagaagttgaatcacctttttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcccagggagagaaacttgtttttagcatgcgaatagaagttgaatcacctttttctg 380
Query: 181 agaaataatttaggggggaatcccttttatatacataggcacatggactgttactctatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agaaataatttaggggggaatcccttttatatacataggcacatggactgttaatctatt 440
Query: 241 gtcttgttctgttgactccaggattaaggcacacattctcttatttgttgtacgtggttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttgttctgttgactccaggattaaggcacacattctcttatttgttgtacgtggttt 500
Query: 301 ttaattttgatttgtggttgtaattttgtgtaggaggtggtcatctgcaggaaactgtgc 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattttgatttgtggttgtaatgttgtgtaggaggtggtcatctgcaggaaactgtgc 560
Query: 361 ctgtgtaatgattagctgtagctgttgtccactccggatcat 402
||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 561 ctgtgtaatgattagctgtagctcttgttcactctggatcat 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_k12.g1 MSMg01no342_k12.g1 CHROMAT_FILE:
MSMg01no342_k12.g1 PHD_FILE: MSMg01no342_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:14 2005
(507 letters)
>mm_chr7_114991554_114992460
Length = 907
Score = 727 bits (376), Expect = 0.0
Identities = 431/450 (95%), Gaps = 4/450 (0%)
Strand = Plus / Minus
Query: 1 cattctgctgcaagaggagcatgggtctaacctactggccatctcttcaccctggcatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cattctgctgcaagaggagcatgggtctaacctactggccatctcttcaccctggcatgt 390
Query: 61 tctgtgtttataaagttggttattccctactcactttttctctgaaatgtaaaatttatt 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 389 tctgtgtttataaaattggttattccctactcactttttctctgaaatgtaaaattcatt 330
Query: 121 gaaagttctttattcattaatttacttttagtgtttcatgtaaattgaaagaatgtattt 180
|| ||| ||| ||||||||||||||||| ||| ||| |||||||| ||||||||||||||
Sbjct: 329 gatagtacttcattcattaatttactttcagtttttaatgtaaatggaaagaatgtattt 270
Query: 181 tccacctttggctataaaaaattatgtgcatgttttaaatgttatttccatccctgtatt 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 269 tccacctttggctataaaaaattatgtgtgtgttttaaatgttatttccatccctgtatt 210
Query: 241 tctaaaaaaaaacaaaagagctgagtggcattggtggatttcttttatcccagcactcag 300
||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 209 tct--aaaaaatc-aaagagctgggtggcattggtggatttcttttatcccagcactcag 153
Query: 301 gaggcagaggcaggcagatcactgtgaatttgagttaagtcagagatgttgcacagagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaggcagaggcaggcagatcactgtgaatttgagttaagtcagagatgttgcacagagaa 93
Query: 361 accctgtcttgaaaaaccagaaagaaaagagtgaaatgccctttgtttatca-taaaaca 419
|||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct: 92 accctgtcttgaaaaaccagaaagaagagagtgaaatgccttttgtttatcattaaaaca 33
Query: 420 tttatttataaaatgaagagttattacata 449
||||||||||||||||||||||||||||||
Sbjct: 32 tttatttataaaatgaagagttattacata 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
