BAC Information

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BAC

Clone NameMSMg01-342N19
Chromosome7 (Build37)
Map Location 82,715,656 - 82,716,176
singlet/doubletsinglet
Overlap geneAkap13
Upstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342N19.T7 (MSMg01no342_n19.b1)MSMg01-342N19.TJ (MSMg01no342_n19.g1)
ACCAG456312AG456313
length723727
length of high quality
(start - end)
518 (54 - 571)495 (62 - 556)
definitionCHROMAT_FILE: MSMg01no342_n19.b1 PHD_FILE: MSMg01no342_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:30 2005CHROMAT_FILE: MSMg01no342_n19.g1 PHD_FILE: MSMg01no342_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACTTTTTCGAGAGGAGCCGCGGAATTCTGGCCTGGC
ACACTCCCTGGAATTCCTAGCTGAGAGGCCTAAGACACTTGTAGGTTTTT
TTATGGACAAAACCATTCAACCACTGTATTTTCCCATGGCTTCATTGTTA
TTTTCTAAGAACTGCAGCTCCCAGAATACAGAAGTTACCTCCCTTGCGTA
GGTGGGGTTTATGGGTTAATTTTGGGTCTTATATCTTTTACATAAAGGCA
ATGCCTTGGACTTACAAGCCATAGAACACTATGGAGTGCTGGGCTACTTA
TTTTTGCATTTATAAATGTAAACACGATTTAAGAAATCAATTACTAGTCA
TCGGGGCACTGCTATCAACTTCCTGTTGGGAAGGGAGAAGGGTTCTCTAA
CTAGGAGTCAGTCCCTGGGTAGACTCCTGCCAGGAAGTGAAATGAGATTA
GTCGTATGGATTCATTTCTTCTTAATTAGAATTTGTGATTAAAATTAACC
CCCATTGTGTGTGTGTTTCCCAGGAGCGCCCTAGCCACACCCTCTATGGG
TGTCTATTTGTGTTTCTTGATCCTGAATACTGCTGCCCTAGTGTTCTAAT
CTGAACAAAAGCCGCACTGCACTCTGATTTTATTTTTGTCATTCCTGACT
CCTCCATTCTCTTTGTTTTCATATAACCCAATTTTTATTCCCCTTTTAAC
CCCTTTTCTCTTAATTGAGGCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACGAGAGAGAGGAGAAATAGCAAAGTCAGATAGAATAGA
ATAATTATGCAGGCCAAGGCCAACTGAAAAGCTGTCATGCACAAATGAAA
TCTATACAGCCATTGTCGAGGGCTAAGGTAGGGAGAAATGAGAACAACAC
GGGGCTGGTAGAGATGGCTCAGTGGTTAGGGGCATTTGCTGCCCCTGCAG
ATGACCTCGATTGGGCTCTCAGCACCCACGTGGCTGCCCATTACCATCTG
TAAACCCCAGTTCCAGGGAAGCTCATGCCCATTTGTGGCCCCCAAGGCCC
CAGGCAAGCAGGCGGTCCATAAACACATTCAGAGACAAACACTCATACAC
ATACAAATAATGTGTTTTTAAAATGTAGGTGTGAAACATACTGACTATAC
CTTAAGAACATGACCAACAGTGGGAGCCTGCCGTGCAGGTATATAATAGG
CCTCTGGACATGTCCGTTCTTACTCCAGTGGATAGCACTGACATGGGACT
TACTGAGCATCTAGCACGTACAAAGGGGACACAGAATCCCACCCTTGGAG
CTGCAGACAGAGTGAAACACAGTATAACACGGTGGCTGTCAGGAAGCAGG
CCCTGTGCTCCAGAAAAACAGAGGGGGTGTCCTGTAAAAAAAGAACAAAC
GCCCTCTTTGTACTCGGGATTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_n19.b1 MSMg01no342_n19.b1 CHROMAT_FILE:
MSMg01no342_n19.b1 PHD_FILE: MSMg01no342_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:30 2005
         (518 letters)



>mm_chr7_82715456_82716376
          Length = 921

 Score =  915 bits (473), Expect = 0.0
 Identities = 508/525 (96%), Gaps = 11/525 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccctggaattcctagctgagaggcctaagacacttgtag---gtttttttatggacaa 57
           ||||||||||||||||||||||||||| | ||||||||| |   || |||||||||||||
Sbjct: 201 ctccctggaattcctagctgagaggcccacgacacttgttgtatgtctttttatggacaa 260

                                                                       
Query: 58  aaccattcaaccactgtattttcccatggcttcattgttattttctaagaactgcagctc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccattcaaccactgtattttcccatggcttcattgttattttctaagaactgcagctc 320

                                                                       
Query: 118 ccagaatacagaagttacctcccttgcgtaggtggggtttatgggttaattttgggtctt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaatacagaagttacctcccttgcgtaggtggggtttatgggttaattttgggtctt 380

                                                                       
Query: 178 atatcttttacataaaggcaatgccttggacttacaagccatagaacactatggagtgct 237
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatattttacataaaggcaatgccttggacttacaagccatagaacactatggagtgct 440

                                                                       
Query: 238 gggctactta----tttttgcatttataaatgtaaacacgatttaagaaatcaattacta 293
           ||||||||||    |    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctacttaccact----gcatttataaatgtaaacacgatttaagaaatcaattacta 496

                                                                       
Query: 294 gtcatcggggcactgctatcaacttcctgttgggaagggagaagggttctctaactagga 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtcatcggggcactgctatcaacttcctgttgggaagggagaagggttctctaactagga 556

                                                                       
Query: 354 gtcagtccctgggtagactcctgccaggaagtgaaatgagattagtcgtatggattcatt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtcagtccctgggtagactcctgccaggaagtgaaatgagattagtcgtatggattcatt 616

                                                                       
Query: 414 tcttcttaattagaatttgtgattaaaattaacccccattgtgtgtgtgtttcccaggag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcttcttaattagaatttgtgattaaaattaacccccattgtgtgtgtgtttcccaggag 676

                                                        
Query: 474 cgccctagccacaccctctatgggtgtctatttgtgtttcttgat 518
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cgccctagccacaccctctatgggtgtctatttgtgtttcttgat 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 921
Length adjustment: 10
Effective length of query: 508
Effective length of database: 911
Effective search space:   462788
Effective search space used:   462788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)