BAC Information

Click to search

BAC

Clone NameMSMg01-343A15
Chromosome7 (Build37)
Map Location 152,244,937 - 152,245,340
singlet/doubletsinglet
Overlap genenone
Upstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
Downstream gene1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343A15.T7 (MSMg01no343_a15.b1)MSMg01-343A15.TJ (MSMg01no343_a15.g1)
ACCAG456446AG456447
length769763
length of high quality
(start - end)		352 (50 - 401)404 (63 - 466)
definitionCHROMAT_FILE: MSMg01no343_a15.b1 PHD_FILE: MSMg01no343_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:43 2005CHROMAT_FILE: MSMg01no343_a15.g1 PHD_FILE: MSMg01no343_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATACGACTCACTATTTGCAGAGGATCCGCGGAATTCCAGGAGACTCACCA
CTATATAATGAGACCTTGTTTCAAAAATAAGCAAACAAAAAAACAAAAAC
AACAAACAAAAATTACCCAGGATCACCTGCCCAGGGAATGGGGCCACCTA
CAGTGGTCTGGGATCCCCCACATTAATTAACAATCAAGACAGTCCCCTAC
AGACATGGCTACATGCCATGATGCACTTAGCAATTCCTCAATTGAGACTC
AAGTGAGCCTAGGCTGTGACAAAATGACTGTTAAAACTAAGACAGGGCCG
GGTGGTGGTGGTGCACGCCTTTAATCTCAGCACTTGGGAAGTAGAGGCAG
GCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACTAAGTGAGTTCTAGGA
CAGCCAGGGTTTTACAGAGAAACCCTGTCTTTAAAAAACTAATCACTTCC
TAAGACTGGTTCTTACTCCGCAAGACAGTTTTCTATCAACTAATTTCTAT
TCCCTGCCCTGTATTGATGATATTACAGTCCCTTTTATTTCACTATTCTT
TTTCTTGTCTCTTTTGTTCCTATTTTTGCCTTTCTCTTTTCTCTTTTTTC
CGCCCCTTCCTTTTTCCTTTTTTTTCTCCCCATTTTTCTCTCTTTCCTGT
TTTTTCTCTATGTCTATATGTACGCGCCTACTTCTTGTAATTATTGATTA
CTTTTCATGATTGTCTTGAATTTATTCCTTTCCCCTTTCTAGTTTATATT
CCACTTTCTTCTTTTTCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCACAGAACATGATCATACCTCTCTCTTCTGCCTCCTTA
ACAGTCTTAAGGGTTAGGGGCAGACATGGTGGCTGTCACATTCTACCAAC
CACATACACCAGGGATTGAGCTTAGGGTACAGTGAACAAACAAATCAAAC
AAAACAAAACCCTTCCCAGATGGGATTGGAAGACCAGAGTCATAGATGTC
CTTACCCCCCAATGTCCTCCATCATTCCGGGAAACCAGGACGATGCAGCT
GACATGGGCTGAGATGACCTGAGCCTGGACCCTGGGTCTGGCTCTCCCTG
TGTCCTTCTGTCCTTCCTTAATGAAAGCACTAGGCCTTCCCCACAGAGGA
GGGTCCAACTGGCCCCTTTCTTCCTCATCTTCCACAGCACACAGAGACAA
GACAGCACTTGGTATAGCCTGTGAGGCTGGTGTGGGAAGGCAAAGAGCCA
GTGTCAGACAGGGTGTACCAGGAAGATGGGAAAGGAGAAAGTCCCTCCTT
TTGTAAGACCGATCACCTAAACTTGTATGTTTATCGGTATTTGGTTTTTT
TTCCATTCTTATTCTATAAATCCATGCCCCTTGTTTTTTTTTGTCTCTGT
AAGTTTTTCATCTTCCCGTTATACTACTTCCCTTATTTTCTTTTATTTTC
TCCAATCCTATCTCTCTACCTTTCGATATCCCCTTTTCCCTTTTTATATT
TTGCTAATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_a15.g1 MSMg01no343_a15.g1 CHROMAT_FILE:
MSMg01no343_a15.g1 PHD_FILE: MSMg01no343_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:43 2005
         (404 letters)



>mm_chr7_152244737_152245540
          Length = 804

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagaacatgatcatacctctctcttctgcctccttaacagtcttaagggttaggggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cacagaacatgatcatacctctctcttctgcctccttaacagtcttaagggttaggggca 545

                                                                       
Query: 61  gacatggtggctgtcacattctaccaaccacatacaccagggattgagcttagggtacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gacatggtggctgtcacattctaccaaccacatacaccagggattgagcttagggtacag 485

                                                                       
Query: 121 tgaacaaacaaatcaaacaaaacaaaacccttcccagatgggattggaagaccagagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaacaaacaaatcaaacaaaacaaaacccttcccagatgggattggaagaccagagtca 425

                                                                       
Query: 181 tagatgtccttaccccccaatgtcctccatcattccgggaaaccaggacgatgcagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tagatgtccttaccccccaatgtcctccatcattccgggaaaccaggacgatgcagctga 365

                                                                       
Query: 241 catgggctgagatgacctgagcctggaccctgggtctggctctccctgtgtccttctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catgggctgagatgacctgagcctggaccctgggtctggctctccctgtgtccttctgtc 305

                                                                       
Query: 301 cttccttaatgaaagcactaggccttccccacagaggagggtccaactggcccctttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cttccttaatgaaagcactaggccttccccacagaggagggtccaactggcccctttctt 245

                                                       
Query: 361 cctcatcttccacagcacacagagacaagacagcacttggtata 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cctcatcttccacagcacacagagacaagacagcacttggtata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |