BAC Information

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BAC

Clone NameMSMg01-343D06
Chromosome7 (Build37)
Map Location 148,570,032 - 148,570,225
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik
Downstream geneTaldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D06.T7 (MSMg01no343_d06.b1)MSMg01-343D06.TJ (MSMg01no343_d06.g1)
ACCAG456570AG456571
length823878
length of high quality
(start - end)		190 (70 - 259)159 (70 - 228)
definitionCHROMAT_FILE: MSMg01no343_d06.b1 PHD_FILE: MSMg01no343_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:57 2005CHROMAT_FILE: MSMg01no343_d06.g1 PHD_FILE: MSMg01no343_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCA
AGAGGAAATGACACAACAGGGACCGTGTAGGGCCCTGGAGAGCAATGTGT
GGAGCCTTGTGTTGAGCTAGAGTCTTGGGGGGTAGGTTGACAGGAAGTCA
AGGTAAGCCTGGAGTTCAGCTAAGGTGTGTGGATGATTCCTGCTGTGCCC
GATGCTGTGGAGGAAGACTTTGTGAGTTGTAGGTCTGTTCCAGTAGCTTT
CCTAGGAGGTTCCCCATAGAGACGCTCATCATACCCTGAGTCCATGCGTC
ATGGTGAGGACTTACTGCTTCCATATCAATGTGCAGATTATTTAACCTCG
GTCGATCTGTTGATGTTCAGTTGTGCCTTATTTCCTGGTATTTCTCCATA
TGTATCTATCGCCTGTATTTCGACTTTTCACTTACTTTATTTGTGTATTA
TATCATTTTTATTTTTCTTTTTATTTGCTCTCTCCTTTTTTTTCATTTTA
CCCTCGCTTTCGTTCTGCTTTTTTTTTTTCTCTCCTTTCATCTTTTACCT
CGTTTACTTTTTTTCTATTTATACCCCTGGCTCTTCCTCGTTTCACATCC
TTTCCCCCCCTCTCTTTTTTTTTCTTTTCTTCATTATTTTCTCTCCATCA
TTTCCATATTTTTAATTCCCACTCTCTTTTCTTCTCCTCTTCTTTTTTTC
ATTCCTTCTATTCTAACCCTCTATTTATTATTACTTATTCTACTCCCTCT
TTACTTCCCTTCTTTTTTCCTTCCTTTCGTTTTTTTCCTTTCCACCCTCA
TACTATTTATCTCTTTATTATTA

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCTAGTCAGAGATATAAAGCAAGTCTCA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGGGGGCCGGTCGTGGTGGC
GCATGCCTTTAATCCCAGCACTCGGGAGTCAGATTTATATATATTTCTAT
AGTTTGATTTCTTTTTTTGACTATAGATGGATTTAATTAATGTTTGATTG
ATTGCATTTATGACCGTTTCTTTTTATTTTATTTTTTTTCTTTTGTACTT
AATCTTTATTTTCCTTCCTTTTTTCTCTTTTCTCCTCTCTCTTTTTTTTT
TTTTTCTTTCTCCCCTTTTTCTTCGAACCCTCGATTTTTCTTTTTTTTTT
TTTTTTTTTTCTTCTTTTTTTTCCTTCTTTTTTATTTTTCTTTTCTTCTT
TTCTTCGTCTTTCTTTTTTTCTTATCTTTTTTTTATTTTTTTCTTTTCCG
CCCGCCCCCTTTTTATCCTTTTTTGTCTTTTCGTTCTTTTTTTCCTCCCC
TTTTCTTTCTTTTTTTCTTCCTTTCTTATCCTTTTCCTTCCTCTCTTTTT
CTCTTTCCTCCTTTTTCTTTCTTCTTCTCCTTTCCTTCTCAACTTTTTTT
TTTTTCTTTTTTTTCTTTTACTACCTCCTTTATCTACTCCCTCTTCTTTC
ATCCTTCCTTCTTTTACCCTCTTCTTTCCTTTATCTTCTTTCCCCCATCC
TCTATTCTTCTTTCTTCTTTTACGATATTGTTTATTCTCTTTTTTCTTTT
CTCTCACTCTTTCCTTCTCTATTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d06.b1 MSMg01no343_d06.b1 CHROMAT_FILE:
MSMg01no343_d06.b1 PHD_FILE: MSMg01no343_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:57 2005
         (190 letters)



>mm_chr7_148569832_148570425
          Length = 594

 Score =  306 bits (158), Expect = 7e-88
 Identities = 185/196 (94%), Gaps = 8/196 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaccgtgtagggccctggagagc-aatgtgtggagccttgtgttgagctagagtcttgg 59
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 394 ggaccgtgtagggccctggagagcaaatgtgtggagccttgtgttgagctagagtctt-g 336

                                                                       
Query: 60  ggggtaggttgacaggaagtcaaggtaagcctggag----ttcagctaaggtgtgt-gga 114
           ||||||||||||||||||||||||||||||||||||    |||||||||||||||| || 
Sbjct: 335 ggggtaggttgacaggaagtcaaggtaagcctggagttcattcagctaaggtgtgtagg- 277

                                                                       
Query: 115 tgattcctgctgtgcccgatgctgtggaggaagactttgtgagttgtaggtctgttccag 174
           ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 276 tgattcctgctgtgcccgatgctgtggaggaagactttgtgggctgtaggtctgatccag 217

                           
Query: 175 tagctttcctaggagg 190
           ||||||||||||||||
Sbjct: 216 tagctttcctaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 594
Length adjustment: 8
Effective length of query: 182
Effective length of database: 586
Effective search space:   106652
Effective search space used:   106652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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