BAC Information

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BAC

Clone NameMSMg01-343J04
Chromosome7 (Build37)
Map Location 130,352,832 - 130,353,139
singlet/doubletsinglet
Overlap genenone
Upstream gene2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a
Downstream geneSlc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343J04.T7 (MSMg01no343_j04.b1)MSMg01-343J04.TJ (MSMg01no343_j04.g1)
ACCAG456850AG456851
length813769
length of high quality
(start - end)
298 (40 - 337)314 (69 - 382)
definitionCHROMAT_FILE: MSMg01no343_j04.b1 PHD_FILE: MSMg01no343_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:27 2005CHROMAT_FILE: MSMg01no343_j04.g1 PHD_FILE: MSMg01no343_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TAAGATGCTGCTGTTCCCATAAATATATTTACACAACATATATTTTAGTC
ACTTAGTACAGTTTTTAAAAATGTTCCTCCACGCTGACACCTGCATCACT
GTTGAATTTCTTTCTCCAGTTGTATGCATATTCCACATCTTGCTGATCCA
GTCATTACATGATGGACATTTGAGGTGTTTTGCCTTTTCCTCTTGGGATA
ACGCTGCTGTGAGTACTCCTGTATAAATCTGGCATAAACAGATGTTTCCA
TTTCATTTACGTAAATAATTGTATTCAGAATTACTGGATCTGTTGCAGCT
GCGTGTTTAACTTTCTCTAATCCTTAAAATCACTATTTGTAATCTATCTA
TTACCCCGCTTGTCTCCCCCCCCTTTATTTTTTCTCTATCCCCTCCTCAT
CTCTCTCTTCTTTTCTACACTTTTTCCATTCTTTTTTTTTTATTTACCCT
CTTATCTTCTTACTTATTTATTATTTTTACCTATTCAATTTTTTTTCCCT
TTTATTCCTCATTTCGTACCACTCCCCTTTTATCTCTCCTTTTTTTCTTC
ACCTCCTTCTTCTTTTTTCCTTCCTTCTCTATTCTCTTCCCCTCTTCATT
TATTCTTTATTCATCTATACCCTTTATTCTTACTCCTTGTTATTTAACTT
TCCATCTTCATCCCTCCTTTTAATTCACATTCCTATTCACTCCTCCCTTC
ATACCTCTTTTTTCCTTACCCCCCTTTTCTCTTTCCATCCCCTCCATTTA
TCTTATTATTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGTTTCCCACCTCTAACTCCCAATGCCGCA
CAGAGATGCTGGACCAGACCACTGGGGGGACTGTAGCCAGTAGGAAAGAG
GTCTCACACTGTGCCCATGACTTTGGGCCAGCCACAAGATGGCTTAACCT
TTTGAGTGCTTGCCACTCTCATCATGTGGTACTCTGGGCTTCCTTAAGAA
TCTAGTGTTCCTTGGGGCTGGAGTGACAGCTCAGTGATTAAGAGTACTGA
CTGGTGGCATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAATTGGATTTC
TGAGTTCCAGGCCAGTCTGGTCTACAGAGTGAGTACCCGTACAGCCAGGG
CTATTCAGATAAACCCTGTCTCCCAATACATTCATTTTTACATATCTTAA
TATCTCCTAATTTTTTGTACCCCAATTTCCCTCTATAGAACACCTGATTT
TATTATTTCTTGAGGCCCTTTTCCCTGTTACCACTTTGTTTCCCCTATTT
TTTCTTTGTTCTTCCTTCTTTTCCCCTTCTTCATCTCTCTTCTTTCCTTT
CTTCTCCTTCCCTCCCCTCATTCTACTTTTTTTTTCCCCCCCCTCTTTCC
CTTCTTTTCTCTCTCCTCTTTTCCTTTTTCTCTTTTTTCTTTCCGCCTCC
CATTTTCTCTCATCTTTCCCACTTCTTACTTTCCTCTTCTCTTTCTCACC
CTTCTTCCTCGATTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_j04.g1 MSMg01no343_j04.g1 CHROMAT_FILE:
MSMg01no343_j04.g1 PHD_FILE: MSMg01no343_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:27 2005
         (314 letters)



>mm_chr7_130352745_130353458
          Length = 714

 Score =  549 bits (284), Expect = e-161
 Identities = 304/314 (96%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtttcccacctctaactcccaatgccgcacagagatgctggaccagaccactggggg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cttgcttcccacctctaactcccaatgccgcacagagatgctggaccagaccactggggg 336

                                                                       
Query: 61  gactgtagccagtaggaaagaggtctcacactgtgcccatgactttgggccagccacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 335 gactgtagccagtaggaaagaggtctcacactgtgcccatgacttggggccagccacaag 276

                                                                       
Query: 121 atggcttaaccttttgagtgcttgccactctcatcatgtggtactctgggcttccttaag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 275 atggcttaaccttttgagtgcttgccactctcaccatgtggtactctgggcttccttaag 216

                                                                       
Query: 181 aatctagtgttccttggggctggagtgacagctcagtgattaagagtactgactggtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aatctagtgttccttggggctggagtgacagctcagtgattaagagtactgactggtggc 156

                                                                       
Query: 241 atcccagcacttgggaggcagaggcagaggcaattggatttctgagttccaggccagtct 300
           |||||||||||||||||||||||||||      |||||||||||||||||||||||| ||
Sbjct: 155 atcccagcacttgggaggcagaggcag------ttggatttctgagttccaggccagcct 102

                         
Query: 301 ggtctacagagtga 314
           ||||||||||||||
Sbjct: 101 ggtctacagagtga 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)