BAC Information

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BAC

Clone NameMSMg01-343M06
Chromosome7 (Build37)
Map Location 82,856,841 - 82,857,089
singlet/doubletsinglet
Overlap geneAkap13
Upstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343M06.T7 (MSMg01no343_m06.b1)MSMg01-343M06.TJ (MSMg01no343_m06.g1)
ACCAG456994AG456995
length766783
length of high quality
(start - end)
249 (66 - 314)303 (69 - 371)
definitionCHROMAT_FILE: MSMg01no343_m06.b1 PHD_FILE: MSMg01no343_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:43 2005CHROMAT_FILE: MSMg01no343_m06.g1 PHD_FILE: MSMg01no343_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCAT
TTACTTTTTCACATTCCCAAGCAGAGGTTTAGGCTTTCTGTTAAACATAG
AAGCAGACTGTGAGAGCACACAGATGCTGTACCGCCCACCAGTTTTTGTG
GCCATTATCATGAACACTTCTGTGTTATTCCACAGCAAACTGCACATAAA
GTGGTCTTGTTGATCAAGAAAGGATCTTTTCTTCAGGCAATTGTTGTGTG
TTCTGACAGACTGGTCCAGGGTAATCTTGTGGTCTCAGTGAAGATGACTT
CATTGAAAAGTCCATCTTATCAAACTATTAGCATTTGCAAGTAGATGGAT
ACTCGGATGTGCATATGTCATGAGTAAGTCACTGCATACCATCAATATAC
TTCATCTCTGCCATGCCCTATACTTGATCCCTTCTAAATCATAAGCTTAA
CCCTTAAAAAATAATTTGTCCGTTTTTTACTAAAACCTTACTTCTTTCTC
ATACCATTATGCCCTTCTATTAATCCTTAAATCATCAACCTTTTTACTTT
TACATCCCATTAGCACTTTTCCATTTTTCACTATTTTTAACCTTAACTTA
CATACCCCCCATCCTTATATACTCATCTATTTTTTTCTTCTCCTCTAATA
TTTCTTTCCTTATTCCTTATCTTATTTTTCTTTCCATAATATCTTTTATC
TTTTATTACTTATTCCTTATTTTCTTCCTTTTCCTCCTCTCTTTTTCCTC
TTCTTCTTCCCCCTCN
AGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGG
TGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTC
GTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGA
TGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATT
AAGGATTTTTGCATCGATATTCATAATAGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGTGCTTTATGTATCATAGTTTCAGTGTGTTCT
TATTATGAGTTGCCCATAGTATCTTTTACTTCTATCTTGTGATATATTGT
GTTGTCACCTGTTATTACATTCATCTTTTAAAGTCTTGAACATTTTTCTT
CCTAACTCCATTTTGTTCTTTCCCCTTTTTTTGCTTTATTCTTTTTTTTC
ACCTCCCCCTCTTTATTTTTTCTCCCTATTCCTTTCTTCTTTTTCTTTTT
TTCTTCCCCCTTTTCTTCCGCATATCTTTTTTATATTCTTTCTTTTCCTC
TATCATATTTTCTTTACTTCCTTTCCCTCTTTTCTTATTCCCTTCTTTTC
TAATTCTCTCTTCCTTTTTTTTCTCACTTTTTTTCCTTCTTATTCTCTCC
TATTATCCTTCCTTTTTCTCATTCTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_m06.b1 MSMg01no343_m06.b1 CHROMAT_FILE:
MSMg01no343_m06.b1 PHD_FILE: MSMg01no343_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:43 2005
         (249 letters)



>mm_chr7_82856641_82857289
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaagcagaggtttaggctttctgttaaacatagaagcagactgtgagagcacacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cccaagcagaggtttaggctttctgttaaacatagaagcagactgtgagagcacacagat 390

                                                                       
Query: 61  gctgtaccgcccaccagtttttgtggccattatcatgaacacttctgtgttattccacag 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gctgtaccacccaccagtttttgtggccattatcatgaacacttctgtgttattccacag 330

                                                                       
Query: 121 caaactgcacataaagtggtcttgttgatcaagaaaggatcttttcttcaggcaattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaactgcacataaagtggtcttgttgatcaagaaaggatcttttcttcaggcaattgtt 270

                                                                       
Query: 181 gtgtgttctgacagactggtccagggtaatcttgtggtctcagtgaagatgacttcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 269 gtgtgttctgacagactggtccagggtaatcttgtggtctcagtgaagatgacttcactg 210

                    
Query: 241 aaaagtcca 249
           |||||||||
Sbjct: 209 aaaagtcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)