BAC Information

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BAC

Clone NameMSMg01-344C14
Chromosome7 (Build37)
Map Location 20,168,560 - 20,169,069
singlet/doubletsinglet
Overlap geneSfrs16
Upstream genePsg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296
Downstream geneRelb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344C14.T7 (MSMg01no344_c14.b1)MSMg01-344C14.TJ (MSMg01no344_c14.g1)
ACCAG457293AG457294
length748744
length of high quality
(start - end)		514 (44 - 557)553 (72 - 624)
definitionCHROMAT_FILE: MSMg01no344_c14.b1 PHD_FILE: MSMg01no344_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:15 2005CHROMAT_FILE: MSMg01no344_c14.g1 PHD_FILE: MSMg01no344_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAGGTATTCTGGGCCACAGAGTGAGTTACAGGCTACCCAGATCTAC
ACTCAGACACTTATCTCAAAAAAGAAAAACAAAAGGGCAAATTATATATT
GTAAAGAAATGACGCCAGGCGTGGTGGTGCACGCCTTTAATCCCAGCACT
CGGGAGGCAGAGGCAGGAGGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC
AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAA
ACACCAAACCCCCGCCCCCAAAAAAGAAATGACAAAGCAGGAGCTGGCCC
TCCCACAGCACATTTGGCTGTCATGGCTTACCACAGAGATAGGAGCCATC
CCCACCACTGTTCCACAGAGGAAAACAACTGAGCTCAAAAAAGCAAAATG
TTTGTTCCTCCACTACAGCAGAAAGAACTGACAGAACAGGCCCAGCCCTG
ACTAGCTCCCCTCTTTGCCAATACACAGTGCAACAGCCCAGGCTCTGCCA
AAGAGCCCTGGGCCAACTGAGGTCTTCCAGTAGTACTCCTAGCTGCCTAA
TTTGGTGGGCACTGAGGTGATGAATCCCCACCCCAGAGCCCCCTGGATCA
AGACCTAGAATACTGAAGCTAAAACCCTAGGCCCAAGGTCTTAATTTTGC
TAAAACAAAATGTTGGAAATGAAAAAAATATTAAAAAATATATATCTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTATGTAGATCAGACTGGACTTAAGCCC
ACAGAGATGCAGTTGCCTCTGCTTCACGAGGGCTGGGATTCAAGGTGTAT
GCTGCTGTGCACAGCTGTATTTTTTTTTAATGTTTATTCATTTTGGGGGG
CAGTTTGGTGGTCAGAGAACAACCTGCGGGAGTCAGTTCTCTTCCTCCAA
TACATCAGTTCCAAGGACGGAACTCAGGCTGTCTGGCTTGGCGGTGTGCT
CTTTTACCAGCTGAGCCATCTTGCCAGGCCCCTCTACCTTGTTTGAAACC
AGGAGCTCAGTGATTAGGTTTATGGCTGTTCAGAGAAGTCCAGGAATCCT
CTTGTCTCTCCCTCCACCACCCCAGTGCCGGGGTTAGAAATGCTCACTCC
TACAGACATCTGCCATGTGGGTGCTGAGGATCGAACTAGGTCCTCACTCT
TGAATAGCAAACACTTTATCCCCTGAGCCTCTTCCCAATCCCTCCTCTCT
GTTTTCTCCTCTTTGCCCTCCTCCCGTGTCTCCCACTCACTGTGCTGCGC
TTCCCTGTCACCCACAGGAGCACCAGAGTTAAAACCGAATGAGATAATGC
CCAAATCAGGGAATAGCTGGACAGAAGGCGATGAAGTCATGCTGACCTGC
TCCGCCCGGGGCTTCCCAGAGCCCAAACTCACCTGGAGTCAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_c14.b1 MSMg01no344_c14.b1 CHROMAT_FILE:
MSMg01no344_c14.b1 PHD_FILE: MSMg01no344_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:15 2005
         (514 letters)



>mm_chr7_20168356_20169269
          Length = 914

 Score =  963 bits (498), Expect = 0.0
 Identities = 507/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaggtattctgggccacagagtgagttacaggctacccagatctacactcaga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaggtaatctgggccacagagtgagttacaggctacccagatctacactcaga 264

                                                                       
Query: 65  cacttatctcaaaaaagaaaaacaaaagggcaaattatatattgtaaagaaatgacgcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacttatctcaaaaaagaaaaacaaaagggcaaattatatattgtaaagaaatgacgcca 324

                                                                       
Query: 125 ggcgtggtggtgcacgcctttaatcccagcactcgggaggcagaggcaggaggatttctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcgtggtggtgcacgcctttaatcccagcactcgggaggcagaggcaggaggatttctg 384

                                                                       
Query: 185 agtttgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtttgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaa 444

                                                                       
Query: 245 accctgtctcaaaacaccaaacccccgcccccaaaaaagaaatgacaaagcaggagctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accctgtctcaaaacaccaaacccccgcccccaaaaaagaaatgacaaagcaggagctgg 504

                                                                       
Query: 305 ccctcccacagcacatttggctgtcatggcttaccacagagataggagccatccccacca 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 ccctcccacagcacatttggctgtcatggcttaccacagagataggagccatcctcacca 564

                                                                       
Query: 365 ctgttccacagaggaaaacaactgagctcaaaaaagcaaaatgtttgttcctccactaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgttccacagaggaaaacaactgagctcaaaaaagcaaaatgtttgttcctccactaca 624

                                                                       
Query: 425 gcagaaagaactgacagaacaggcccagccctgactagctcccctctttgccaatacaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcagaaagaactgacagaacaggcccagccctgactagctcccctctttgccaatacaca 684

                                         
Query: 485 gtgcaacagcccaggctctgccaaagagcc 514
            |||||||||||||||||||||||||||||
Sbjct: 685 atgcaacagcccaggctctgccaaagagcc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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