BAC Information

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BAC

Clone NameMSMg01-344D19
Chromosome7 (Build37)
Map Location 73,839,283 - 73,839,735
singlet/doubletsinglet
Overlap genenone
Upstream geneTm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7
Downstream geneLins2, Lass3, Adamts17, Lysmd4, Mef2a, EG665304, Lrrc28, Ttc23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344D19.T7 (MSMg01no344_d19.b1)MSMg01-344D19.TJ (MSMg01no344_d19.g1)
ACCAG457350AG457351
length754774
length of high quality
(start - end)		456 (36 - 491)514 (70 - 583)
definitionCHROMAT_FILE: MSMg01no344_d19.b1 PHD_FILE: MSMg01no344_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:21 2005CHROMAT_FILE: MSMg01no344_d19.g1 PHD_FILE: MSMg01no344_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATG
TAATACTTAAAATCTGATAGCCAAAGTCAATAAAGCAAGTCGGGGCTCTC
TAGTAGCACACTCTGTGAAACTCTGGCTATCTGATGTTCCTCCTGTTATC
TCTGCATTGCTTGAAAAACTGTTGGAACTCAGATATGGAGTTCTAACTGG
CAGATGGCCGAGCTGGCCATGCGGAGAGAGCACAGTGGCCCTCACACAGG
TGCGGCCAGATCTCCCAGTCTCAGAGGCAGAGGCAGCATCGGGCCTGAGT
TGTGTGTGCTCCGAAGCTGTGCTCTCCCTCTCTTAGCCACGGAGTCCTTT
CTTCCTCTCTCTCCTTCTTTTCCTTCTTTGTGAACTTTGAAACTGCCTGG
TTTTATTCTTAGCCAATGTTCTAAAACTAACTTGTAAATTACATCTGAAT
GGTTAAAAAAAAACACTTTAATGCATGTAAAGATCTAAAATATTTTTTTA
ACCAATGGCTCATATATTAAGTAACATCTCTTTGAATTCTCTTTCCCCCT
TTTCTTTTCCTGTAAAGCACAGGATTTAACTCCATGGGTTGCACATGCTA
AGGAAAGAACCTATCCTTGATCCAACTCCGAACTTCCNTAGGGATTTAAA
AAAAAAATTTGTATTGGGTAAGGTGGCCTTTAGCCAAAACCCAACTGCAA
TTTATAAGTATGTGCCTTCCACCTATCCAACACCAAATAAGAGTTTCTCC
TTCT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAGCTGAATGATATTGATGATTAATTTTGT
CTTCTGTGAGCATGCATCTTCTAGCACTATGAAAGCTAGCTGGTAGGGAT
GAAGGTTCCAGGTCAGGATTTCTCCATGCTTATGATCCAAGTATGTGGTG
TCTTTAGAAATATGGATGTCTTACTTAGAGTTTCCATTGCTGTGAAAAGA
CACTATGACCAAGGCAACTCTTATATATGACAGCATTTAATTGGGACTGG
CTTACAAGTTCAGAGGTTTATTATCATCAAGGCGGGAACATAGCAGTGTC
CAAGCAGGCATGGTATGGGAGGAGCTGAGAGTTCTACATCTTCATCTGAA
GGCTGCTAGGAGAAGACTGACTCCCATGGGGCTAAGAGGAAGGTCTTAAA
GCCTACCTCCAACAATGCCACACCTATTCCAACAAGGCCACATCTCCTAA
TAGTGCCATTCCTTGGGCCAAGCATATTCAAACCACCACAATGGTCCTAC
TGTCACGTTCTCAAGAGTAAGTAACAATAATGACAATAACCTGTAATGTG
TGGGTTCTATGACATCCTGATGGACCATAATCTAAAAGAGGAACCCCATT
TCTGGGACTGGTCTACTTGGGGCATTGATCTCCCATTATAGGGAAACTGC
CTTTTCCTTGTGGGTGTCGCGCGTGCTTTTTTTATATTACTCTACCCTTN
CCCACTCAAATCATTTCTTTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_d19.b1 MSMg01no344_d19.b1 CHROMAT_FILE:
MSMg01no344_d19.b1 PHD_FILE: MSMg01no344_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:21 2005
         (456 letters)



>mm_chr7_73839079_73839935
          Length = 857

 Score =  853 bits (441), Expect = 0.0
 Identities = 450/453 (99%), Gaps = 1/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaatgtaatacttaaaatctgatagccaaagtcaataaagcaagtcggggctct 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattccaatgtaagaattaaaatctgatagccaaagtcaataaagcaagtcggggctct 598

                                                                       
Query: 65  ctagtagcacactctgtgaaactctggctatctgatgttcctcctgttatctctgcattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctagtagcacactctgtgaaactctggctatctgatgttcctcctgttatctctgcattg 538

                                                                       
Query: 125 cttgaaaaactgttggaactcagatatggagttctaactggcagatggccgagctggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cttgaaaaactgttggaactcagatatggagttctaactggcagatggccgagctggcca 478

                                                                       
Query: 185 tgcggagagagcacagtggccctcacacaggtgcggccagatctcccagtctcagaggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgcggagagagcacagtggccctcacacaggtgcggccagatctcccagtctcagaggca 418

                                                                       
Query: 245 gaggcagcatcgggcctgagttgtgtgtgctccgaagctgtgctctccctctcttagcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaggcagcatcgggcctgagttgtgtgtgctccgaagctgtgctctccctctcttagcca 358

                                                                       
Query: 305 cggagtcctttcttcctctctctccttcttttccttctttgtgaactttgaaactgcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cggagtcctttcttcctctctctccttcttttccttctttgtgaactttgaaactgcctg 298

                                                                       
Query: 365 gttttattcttagccaatgttctaaaactaacttgtaaattacatctgaatggtt-aaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 gttttattcttagccaatgttctaaaactaacttgtaaattacatctgaatggttaaaaa 238

                                            
Query: 424 aaaaacactttaatgcatgtaaagatctaaaat 456
           |||||||||||||||||||||||||||||||||
Sbjct: 237 aaaaacactttaatgcatgtaaagatctaaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 857
Length adjustment: 10
Effective length of query: 446
Effective length of database: 847
Effective search space:   377762
Effective search space used:   377762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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