BAC Information

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BAC

Clone NameMSMg01-344N17
Chromosome7 (Build37)
Map Location 25,837,584 - 25,837,998
singlet/doubletsinglet
Overlap geneGrik5
Upstream geneV1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3
Downstream geneZfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344N17.T7 (MSMg01no344_n17.b1)MSMg01-344N17.TJ (MSMg01no344_n17.g1)
ACCAG457819AG457820
length749777
length of high quality
(start - end)		422 (37 - 458)234 (78 - 311)
definitionCHROMAT_FILE: MSMg01no344_n17.b1 PHD_FILE: MSMg01no344_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:10 2005CHROMAT_FILE: MSMg01no344_n17.g1 PHD_FILE: MSMg01no344_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCT
TTGTCTACCCAGAATCAGGAAGAGACTTTCTTGTTTCCTAAAAATGTAGT
ACCCGCTCCTGAGATCTTTCCTTATGGATGTGTAACTGAGGAGTGCCAGT
TAGTAAAGCAATGATTTGGCCGTCCCATTGCTTATTTACCTTTGTCAGGG
ATCAATATCCATCTGCATGTGGACTTTCTAACCCTCTGCCCTACTGGCCT
GCCCTAAGCATCACAGCCTGCTTCAGTATTAATGTTCACCAGAGTAAACC
TACCAGGCTTTTTTTTTAAACCACTAAAAGACTTTCTTTTGAGCCAGGTG
TGGTGGCACTCACCTTTGATTCCAGTACTTTCAAGGCACAGACATGGCCA
GGCATCTGTGCCTCACACCTTCAACCCAGCACTTGGGAGGCAGAGGCAGA
TGGAGCTCTGAGTTTGAGGCCAACCTGGTCCTACGTTGCAGTTCCCGGAC
AGCAGAGAAATACTATCTCCAAATAAAACAAAAAATCCCTGTGTGTGTGT
GTGTGTGCCTGCTGTTGTTCCTCTTTTCACTTTTCCCTATTCCCCTCCTC
TTTTTTTCCCTCTTTATTCTTCCCTCCCTTCCCCTTCTCTCTCCTTTTTT
TTTCTCTTTCTCACCCAATTTACACTTTATTATTATTTACCTTCTTCTCT
AATATTCCCCTTCTCATTATCCTCACTAATTTTTTCTTTTCTTCTACTG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAATCCTCCTGCCTCAGTTTGCCAA
GCACTGGAATTACAGATGTCCAGCACCACTCACTCCCTGCTCGCCGTTCT
GCTTGTCATTGAGGAGCAGTAGAGAGCTAGCATGGTGGTGCACAGCTTTG
ACCCTAGCAGCACTCAGGAGGCAGAGGCAGGCGGATCTCTCGGGAGCCAA
GGCCAGCCTGGTCCACGTACTGAGTTCCCAGGTAGTTCTTGCTAGATAGA
GATCCTCAGAGCATCAGTGGAGTGGCAGGGACGTGCATCGGTCCATTTGA
CACAGGTAGATTGCTTACAGTTTGACGCCCATAACAACAATGATAGGAGA
GGTCCATAGACTATAACCTGCCTAGATCCTGATGGTGTCATCTGCCTTGA
TGGTGGGTAGCGCAGTATCCCTCCCCCTTTCTGATACTTCCTTGTTAACC
GGAGACAGTCTAATTAACCTTCACCTTCCCTCCTTGTTATACGTCGCTTC
AACTTCATCCTCTTTCTGTTCAAACTGTGTCCCCCCCCATTATTTCTGTT
TTGCACTTTGCCCTCTCTTCTATCGTTTAAGCTATATCTTTTTTTTCCCG
CTTTTTTCTTGTTTGCTATCTCTGTGTTTCCATTTGTCCCCTTTTTATTT
TTATTCCCCCCCCCTTTTCTTCTCCCCTCCTCTTATATCTCTCTACTCTC
CTCTCCTCTATTCTTCTCTCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_n17.b1 MSMg01no344_n17.b1 CHROMAT_FILE:
MSMg01no344_n17.b1 PHD_FILE: MSMg01no344_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:10 2005
         (422 letters)



>mm_chr7_25837496_25838317
          Length = 822

 Score =  750 bits (388), Expect = 0.0
 Identities = 409/416 (98%), Gaps = 2/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctttgtctacc-cagaatcaggaagagactttcttgtttcctaaaaatgtagtac 66
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattctttgcctaccacagaatcaggaagagactttcttgtttcctaaaaatgtagtac 444

                                                                       
Query: 67  ccgctcctgagatctttccttatggatgtgtaactgaggagtgccagttagtaaagcaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccgctcctgagatctttccttatggatgtgtaactgaggagtgccagttagtaaagcaat 384

                                                                       
Query: 127 gatttggccgtcccattgcttatttacctttgtcagggatcaatatccatctgcatgtgg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatttggccgtcccattgcttatttacctttgtcagggatcaatatccatctgcatgtgg 324

                                                                       
Query: 187 actttctaaccctctgccctactggcctgccctaagcatcacagcctgcttcagtattaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actttctaaccctctgccctactggcctgccctaagcatcacagcctgcttcagtattaa 264

                                                                       
Query: 247 tgttcaccagagtaaacctaccaggctttttttttaaaccactaaaagactttcttttga 306
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 263 cgttcaccagagtaaacctaccaggctttttttt-aaaccactaaaagactttctttgga 205

                                                                       
Query: 307 gccaggtgtggtggcactcacctttgattccagtactttcaaggcacagacatggccagg 366
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 gccaggtgtggtggcactcacctttgattccagtactctcaaggcacagacatggccagg 145

                                                                   
Query: 367 catctgtgcctcacaccttcaacccagcacttgggaggcagaggcagatggagctc 422
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 144 catctgtgcctcacacctttaacccagcacttgggaggcagaggcagatggagctc 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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