BAC Information

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BAC

Clone NameMSMg01-345E06
Chromosome7 (Build37)
Map Location 97,526,328 - 97,526,824
singlet/doubletsinglet
Overlap geneSytl2
Upstream geneFzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
Downstream geneCcdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345E06.T7 (MSMg01no345_e06.b1)MSMg01-345E06.TJ (MSMg01no345_e06.g1)
ACCAG458129AG458130
length763760
length of high quality
(start - end)		520 (54 - 573)497 (84 - 580)
definitionCHROMAT_FILE: MSMg01no345_e06.b1 PHD_FILE: MSMg01no345_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:41 2005CHROMAT_FILE: MSMg01no345_e06.g1 PHD_FILE: MSMg01no345_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAAGTTTCTGCGCTAATATCCACTTATCAGTGAGTAC
ATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCC
CTCCAGGTCCATCCATTTGCCTAAGAATTTCATAAATGCATTCTTTTTAA
TAGCTCAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATCCAT
TCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAA
TAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGA
CCTCTTCTGGATATATGCCCAGGAGAGGTATTTCGGGATCCTCCGGTAGT
ACTACGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTG
TACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCTGC
ATCCTCGCCAGCATCTGCTGTCACCTGGATTTTTGATCTTAGCCATTCTG
ACTGGTGTGACGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGAT
GATTAAGGATGTTGAACATTTTTTCTTGTGCTTCTCTGCCATTTTTTATT
CCTAGGTGAAAAATTTTTTGTTCGATTTTGAAACCCCTTTTTAATCGGGA
CTATCTGTATTCCCCGTAGTCCCTCTTCCTGTGAACCCTTAAGTCTTTTT
GGGTTAATCACCC

TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGAAGGAAAT
ACTACTTACCCACCATAGAATTTTTGAAGAAATATTTTTATTTTAATATA
ACAACTTTATATGTAAAATATTTAAGAAGAATCACACACATATATTTTAA
AAAATACTCATCTGTGATATTGCTGTTCAATAGTAACTTTTGCTAACTTG
TAGTTATACACCCTGCTAAAATTTTTAGGTATGTATATATTTCATAAATT
GTATTTATACTACCCTGACATTTTAAGATTTACTTTTAATTTTGCACAAG
AGTATTTTGTCTGCTTCTATGCCCATTCACCATGGTCTGCATGCCAAAAG
AGGGTGTCAAATCTCTGAACTGGAGTTACAGATGGCTTTGAGCCACCATG
TGGATGCTATTGAACCCAGGTTCTCTGGAAGAACAGCCAGTGCCCTTAAC
CACTGAGCCATCTCTAACCCCTACCCACAAGACTTCCTTATTTTAGCCAA
GAGTTTATCACAAATGTTTTCCTCGTTATTAAATAGTCTGGTAATAGACA
TATAATCCTTTAAGACTTTCACAATTATTGGCCAAAATTTAATGATTCCA
TGTGTACTTAAGTAATAAAGCTGAAATCGGCTATGGTACAGAAATGTGCA
AGGCCCTTGGTTTTTGCTTTTATCCGAGTTGGATAAAAATTAAGGACTGG
AATTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_e06.g1 MSMg01no345_e06.g1 CHROMAT_FILE:
MSMg01no345_e06.g1 PHD_FILE: MSMg01no345_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:41 2005
         (497 letters)



>mm_chr7_97526128_97527024
          Length = 897

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagagagaaggaaatactacttacccaccatagaatttttgaagaaatatttttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagagagaaggaaatactacttacccaccatagaatttttgaagaaatatttttattt 260

                                                                       
Query: 61  taatataacaactttatatgtaaaatatttaagaagaatcacacacatatattttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatataacaactttatatgtaaaatatttaagaagaatcacacacatatattttaaaaa 320

                                                                       
Query: 121 atactcatctgtgatattgctgttcaatagtaacttttgctaacttgtagttatacaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atactcatctgtgatattgctgttcaatagtaacttttgctaacttgtagttatacaccc 380

                                                                       
Query: 181 tgctaaaatttttaggtatgtatatatttcataaattgtatttatactaccctgacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctaaaatttttaggtatgtatatatttcataaattgtatttatactaccctgacattt 440

                                                                       
Query: 241 taagatttacttttaattttgcacaagagtattttgtctgcttctatgcccattcaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatttacttttaattttgcacaagagtattttgtctgcttctatgcccattcaccat 500

                                                                       
Query: 301 ggtctgcatgccaaaagagggtgtcaaatctctgaactggagttacagatggctttgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtctgcatgccaaaagagggtgtcaaatctctgaactggagttacagatggctttgagc 560

                                                                       
Query: 361 caccatgtggatgctattgaacccaggttctctggaagaacagccagtgcccttaaccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccatgtggatgctattgaacccaggttctctggaagaacagccagtgcccttaaccac 620

                                                                       
Query: 421 tgagccatctctaacccctacccacaagacttccttattttagccaagagtttatcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagccatctctaacccctacccacaagacttccttattttagccaagagtttatcacaa 680

                            
Query: 481 atgttttcctcgttatt 497
           |||||||||||||||||
Sbjct: 681 atgttttcctcgttatt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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