BAC Information

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BAC

Clone NameMSMg01-345J19
Chromosome7 (Build37)
Map Location 80,857,278 - 80,899,517
singlet/doubletdoublet
Overlap geneA830073O21Rik
Upstream geneLOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061
Downstream geneSt8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345J19.T7 (MSMg01no345_j19.b1)MSMg01-345J19.TJ (MSMg01no345_j19.g1)
ACCAG458394AG458395
length759750
length of high quality
(start - end)		572 (54 - 625)569 (85 - 653)
definitionCHROMAT_FILE: MSMg01no345_j19.b1 PHD_FILE: MSMg01no345_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:06 2005CHROMAT_FILE: MSMg01no345_j19.g1 PHD_FILE: MSMg01no345_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,898,977 - 80,899,517)(80,857,278 - 80,857,846)
sequence
NNNNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAACATAGAAAATAATGTAAGTCAGTGGGGAACATGGG
GGAAATAATAATAATATAAGTCAAGATAAACGATCCGCTTGGGAAAACAT
CCAATTTGCAGTACAGGTGTAAACTAACCTCGTTAATGGATGTAAGGAGT
ACCTACAAATCAATAAAAAAGACCAATCATCTAATTGAAAAATTTGTCAA
AGGATATAAAAACCGGCAGGTCACAGACAGCGGAAAAAGCAAACAAATGG
CTTTGCATTCTACAACCTCACAGTAAGATAAATCCAAAGTCAGCCTCTAA
AGAGAGCCCATTAACCATCTGTACATTTAACAAGCGTCAAAGTGGCTGAC
GATACACAAAGACAAGACCACAAGAGACAGGTCCTCTCGTTATATGACTG
AATGCACACACTGTCCCACACAGGGGACAGTCTGTCGGGTTATAAGGGTA
CAAACCCCATCAAGACTTTCCCTTTTGGGATTTTGTCGTAATCACATGCT
TCAACTTACATATTACATTAGCAAGAGACCAACCCCCATGAAGTATGATG
CCTCTGCATCGTTATGGAGCTGCTGACCTCTCATATATGCATATATGCAA
GATTGGCATTTATATAATCCAAGATGAGACACATAGTATATGTGTTGAAG
AAAAGGAAGATACCCACATGCNNAAAAATAAGTCTGAAGCCACTTCCTCC
CTAGAAAAA

NNNNTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGCTCTTGCCTCC
AAGACAAACATTGAAAGGAGAGGTAGGGGACTTCAACACTTTAATGTTGA
CAACAGCTAGATTTGGGATAACTACTTGGAAAGACCACAATTAAGAGGTA
AAGAGCAACAAACACAGTGCCCAGAGGCAGAAGTTCTCAACCTGGTTGCC
TATTAGAGTCACCAGGGGAGCTATTTAAGTGTGCTGATGCACAGCTCTAT
CAGGGAAGATTTGAATTAATTGGTCTGGTGTTGGGCACCAGGGTTTGTAA
AAGCTCCCCAGGGGATTCTAATGTGTAACCTAGGTGGTCCACTCCTGCCC
AAGAGATGCCTTTTCTGTGGTATAATTACATTTAAGAGACCTAAATTAAT
TTATTTATGGAAGACAGAGGAGAGAAGGGACCCAACCTCAATTGAATGTT
CTGTGCTAAGTGTATAGATGTAAAATTCATTGAAAGCTGGTTAGATGCCA
AGCCTTATCTTAACTACTGTCCCCGTGTTTGCTCTCCACGGTGGCTCTTC
TCAACTGATTTGCTTCCATTCTATAAAGGAGGAAACAGAGGGTTACTGAC
AGCCAGATGCTTACCTTGAATTAGTTAGATGATAATAAATAAATAAATTA
ATGCCTAAGTGAACGTTGTCCCAGGATCACAGAGCTGGGGGAATAGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_j19.b1 MSMg01no345_j19.b1 CHROMAT_FILE:
MSMg01no345_j19.b1 PHD_FILE: MSMg01no345_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:06 2005
         (572 letters)



>mm_chr7_80898546_80899517
          Length = 972

 Score = 1038 bits (537), Expect = 0.0
 Identities = 540/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 32  cagtggggaacatgggggaaataataataatataagtcaagataaacgatccgcttggga 91
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 972 cagtggggaacatgggggaaataataataatataagtcaagataaacgatccacttggga 913

                                                                       
Query: 92  aaacatccaatttgcagtacaggtgtaaactaacctcgttaatggatgtaaggagtacct 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aaacatccaatttgcagtacaggtgtaaactaacctcgttaatggatgtaaggagtacct 853

                                                                       
Query: 152 acaaatcaataaaaaagaccaatcatctaattgaaaaatttgtcaaaggatataaaaacc 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 acaaatcaataaaaaagaccaatcatctaattgaaaaatttgtcaaaggatataaaaacc 793

                                                                       
Query: 212 ggcaggtcacagacagcggaaaaagcaaacaaatggctttgcattctacaacctcacagt 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggcaggtcacagacagcggaaaaagcaaacaaatggctttgcattctacaacctcacagt 733

                                                                       
Query: 272 aagataaatccaaagtcagcctctaaagagagcccattaaccatctgtacatttaacaag 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aagataaatccaaagtcagcctctaaagagagcccattaaccatctgtacatttaacaag 673

                                                                       
Query: 332 cgtcaaagtggctgacgatacacaaagacaagaccacaagagacaggtcctctcgttata 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cgtcaaagtggctgacgatacacaaagacaagaccacaagagacaggtcctctcgttata 613

                                                                       
Query: 392 tgactgaatgcacacactgtcccacacaggggacagtctgtcgggttataagggtacaaa 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgactgaatgcacacactgtcccacacaggggacagtctgtcgggttataagggtacaaa 553

                                                                       
Query: 452 ccccatcaagactttcccttttgggattttgtcgtaatcacatgcttcaacttacatatt 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ccccatcaagactttcccttttgggattttgtcgtaatcacatgcttcaacttacatatt 493

                                                                       
Query: 512 acattagcaagagaccaacccccatgaagtatgatgcctctgcatcgttatggagctgct 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acattagcaagagaccaacccccatgaagtatgatgcctctgcatcgttatggagctgct 433

            
Query: 572 g 572
           |
Sbjct: 432 g 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_j19.g1 MSMg01no345_j19.g1 CHROMAT_FILE:
MSMg01no345_j19.g1 PHD_FILE: MSMg01no345_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:06 2005
         (569 letters)



>mm_chr7_80857078_80858046
          Length = 969

 Score = 1085 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagctcttgcctccaagacaaacattgaaaggagaggtaggggacttcaacactttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagctcttgcctccaagacaaacattgaaaggagaggtaggggacttcaacactttaa 260

                                                                       
Query: 61  tgttgacaacagctagatttgggataactacttggaaagaccacaattaagaggtaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgacaacagctagatttgggataactacttggaaagaccacaattaagaggtaaaga 320

                                                                       
Query: 121 gcaacaaacacagtgcccagaggcagaagttctcaacctggttgcctattagagtcacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaacaaacacagtgcccagaggcagaagttctcaacctggttgcctattagagtcacca 380

                                                                       
Query: 181 ggggagctatttaagtgtgctgatgcacagctctatcagggaagatttgaattaattggt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ggggagctatttaagtgtgctgatgcacagctccatcagggaagatttgaattaattggt 440

                                                                       
Query: 241 ctggtgttgggcaccagggtttgtaaaagctccccaggggattctaatgtgtaacctagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtgttgggcaccagggtttgtaaaagctccccaggggattctaatgtgtaacctagg 500

                                                                       
Query: 301 tggtccactcctgcccaagagatgccttttctgtggtataattacatttaagagacctaa 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtccactcctgcccaagagatgctttttctgtggtataattacatttaagagacctaa 560

                                                                       
Query: 361 attaatttatttatggaagacagaggagagaagggacccaacctcaattgaatgttctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaatttatttatggaagacagaggagagaagggacccaacctcaattgaatgttctgt 620

                                                                       
Query: 421 gctaagtgtatagatgtaaaattcattgaaagctggttagatgccaagccttatcttaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctaagtgtatagatgtaaaattcattgaaagctggttagatgccaagccttatcttaac 680

                                                                       
Query: 481 tactgtccccgtgtttgctctccacggtggctcttctcaactgatttgcttccattctat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactgtccccgtgtttgctctccacggtggctcttctcaactgatttgcttccattctat 740

                                        
Query: 541 aaaggaggaaacagagggttactgacagc 569
           |||||||||||||||||||||||||||||
Sbjct: 741 aaaggaggaaacagagggttactgacagc 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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