BAC Information

Click to search

BAC

Clone NameMSMg01-345K17
Chromosome7 (Build37)
Map Location 15,695,192 - 15,695,701
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381
Downstream geneLOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345K17.T7 (MSMg01no345_k17.b1)MSMg01-345K17.TJ (MSMg01no345_k17.g1)
ACCAG458437AG458438
length728732
length of high quality
(start - end)		513 (37 - 549)518 (72 - 589)
definitionCHROMAT_FILE: MSMg01no345_k17.b1 PHD_FILE: MSMg01no345_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:10 2005CHROMAT_FILE: MSMg01no345_k17.g1 PHD_FILE: MSMg01no345_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATG
CTCCTCCCACACGTTGGCTCCACCTACTTGCAATATTCAAATCCTTAATT
CTCAGATAACCTTTGATGCTCCTCTGGTGGTAAAATTCATGCCTTTTTTT
TTCCTTTGTAATCCTTTCTTTCTTCTTATTTTATATTTTATTACTTTTAT
TATTTCACAGTCCAAACACTGCTTTCTTCCAAGTCCCCCCTCCCGCAAGT
CTTCACCTCAATCCTCACCCCACATCTCCAAGAGGATGCCCTCCATACCA
GGCCTCCCCACACCCTGGGTCTTTCCTGGGTTAGGTTTCTCTTCTCCCAC
TGAGGCTAGACTAAGAGGTACTCTGCTGTATAAGTGTCAGGGGCATAGAA
CCTGCTCATGTATGCTCCCTGATTGGTGGTTCAGTGTCTGAGAGAAATCA
GGGTCTGGGTTAGGTGAGACTGCTTCTCATCCTATGGGGTTGGCCTCCTC
CTCTGATTATTTAACATATCCCTAATTTAACCACAGAGGTTCATGTCACC
TGCCCAATGCCTGGGTGTAAGTACCTACATCAGTCTCAGTCAACTGCTTG
ATGGGCTGCTCANAAGACAGCAAGCTAGGCTGCTGTCTGTAAGGACTCCC
TAGCATCCGAAATAATGTCCGCCTTGGAGCCCCTCTTGATTGGGATCCCG
CGGATCCCTCTTTATGGCCCCAAAAGGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGATCCCAGTCAAGAGGAGGCTCCAAGGCC
TGACACTATTACTGATGCTATGGAGTCCTTACAGACAGCAGCCTAGCTTG
CCTGTCTTCTGAGCAGCCCATCAAGCAGTTGACTGAGACTGATGTAGGTA
CTTACACCCAGGCATTGGGCAGGTGACATGAACCTCTGTGGTTAAATTAG
GGATATGTTAAATAATCAGAGGAGGAGGCCAACCCCATAGGATGAGAAGC
AGTCTCACCTAACCCAGACCCTGATTTCTCTCAGACACTGAACCACCAAT
CAGGGAGCATACATGAGCAGGTTCTATGCCCCTGACACTTATACAGCAGA
GTACCTCTTAGTCTAGCCTCAGTGGGAGAAGAGAAACCTAACCCAGGAAA
GACCCAGGGTGTGGGGAGGCCTGGTATGGAGGGCATCCTCTTGGAGATGT
GGGGTGAGGATTGAGGTGAAGACTTGCGNNAGGGGGGACTTGGAAGAAAG
CAGTGTTTGGACTGTGAAATAATAAAAGTAATAAAATATAAAATAAGAAG
AAAGAAAGGATTACNAAGGATAAAAAATGGGATGAATTTTTACCCTCAGA
GGAGCATCCNAGGTTATCTTGAGAATTAAGGATTTTGATTATTGGCATGT
ATGTGGAGCCCACGTGTTGTGAGGAGCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_k17.b1 MSMg01no345_k17.b1 CHROMAT_FILE:
MSMg01no345_k17.b1 PHD_FILE: MSMg01no345_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:10 2005
         (513 letters)



>mm_chr7_15694989_15695901
          Length = 913

 Score =  917 bits (474), Expect = 0.0
 Identities = 501/510 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgctcctcccacacgttggctccacctacttgcaatattcaaatccttaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgctcctcccacacgttggctccacctacttgcaatattcaaatccttaat 263

                                                                       
Query: 64  tctcagataacctttgatgctcctctggtggtaaaattcatgcctttttttttcctttgt 123
           ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 264 tctcagacaacctttgatgctcccctggtggtaaagttcatgcctttttttttcctttgt 323

                                                                       
Query: 124 aatcctttctttcttcttattttatattttattacttttattatttcacagtccaaacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatcctttctttcttcttattttatattttattacttttattatttcacagtccaaacac 383

                                                                       
Query: 184 tgctttcttccaagtcccccctcccgcaagtcttcacctcaatcctcaccccacatctcc 243
           |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct: 384 tgctttcttccaagtcccccctcctgcaattcttcacctcaatcctcaccccacctctcc 443

                                                                       
Query: 244 aagaggatgccctccataccaggcctccccacaccctgggtctttcctgggttaggtttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaggatgccctccataccaggcctccccacaccctgggtctttcctgggttaggtttc 503

                                                                       
Query: 304 tcttctcccactgaggctagactaagaggtactctgctgtataagtgtcaggggcataga 363
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 tcttctcccactgaggctagactaagaggtcctctgctgtataagtgtcaggggcataga 563

                                                                       
Query: 364 acctgctcatgtatgctccctgattggtggttcagtgtctgagagaaatcagggtctggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acctgctcatgtatgctccctgattggtggttcagtgtctgagagaaatcagggtctggg 623

                                                                       
Query: 424 ttaggtgagactgcttctcatcctatggggttggcctcctcctctgattatttaacatat 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 ttaggtgagactgcttctcatcctatggggttggcctcctcctctgattattgaacatat 683

                                         
Query: 484 ccctaatttaaccacagaggttcatgtcac 513
           |||||||||||||||| |||||||||||||
Sbjct: 684 ccctaatttaaccacaaaggttcatgtcac 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |