BAC Information

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BAC

Clone NameMSMg01-345K18
Chromosome7 (Build37)
Map Location 6,809,524 - 6,809,999
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345K18.T7 (MSMg01no345_k18.b1)MSMg01-345K18.TJ (MSMg01no345_k18.g1)
ACCAG458439AG458440
length780755
length of high quality
(start - end)		480 (56 - 535)463 (87 - 549)
definitionCHROMAT_FILE: MSMg01no345_k18.b1 PHD_FILE: MSMg01no345_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:10 2005CHROMAT_FILE: MSMg01no345_k18.g1 PHD_FILE: MSMg01no345_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATTANNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTGGACTCCACAGAGTAATGGTTCAGTCATGGTA
TGCACCTCAAAGCCCAGGTTTGTATAGACTATCCCACCAGGCTTGAGTAA
GTTCACTCTAATGTGGTGCATCTGTCAAGCTTCCTCCAGGAAGGCTCTCC
TAGTAAGCCAAGGCCAAGCTTTATTCATCTTCCCCTCTAAATAAAAACTG
GGTGGAAACAGATTTCCTTAAAAGAATCAACCAGGGAGGGCAACATTCTG
CAGACTCTCATTTCTAGAACATGTTAATTTGACGAGCTTTGTAGATAAAG
TTGGAGATAACTCTTTGTTTATATGTGTACATATTTGTGTGTCTGTGCAT
GACTGTGTGGAGTATGTGCATACATACAATACCCAAGGGACCTAGAAGTA
TCAGATCCTTTGGAGCTAGAGTTACAGATGGTTTTGAGTTGCCTAATATG
GATGCTACGAACCTGACTTAGGTCCTCTGTAAGGATAGCAAGTGTTCTTT
ACCACTGAGCCATCTCTTCAGTCCCAAACCACTTTTCAAAGTGAATAAGC
TGCATGGGGAGTGCCAGAACCACCTGTGCCTGCCAAAAAAGGTTCGTTAT
TAATTATTAAAGCTCAATTGGGATTTTCACACCGTTCCCGGGAGTTTTAG
AAACCCCCCAAAAAAAATTCCCTCGGATACCCCCAGTGGGTGGAAATTCT
TGTTAATAAAAGTTTATTGTTAACACGGTN

TCTATTTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCAAGAAAC
AGACTGGGAGGAAGAAGCAGCTCATTATGAGAAAAAAGAGTATCAGCCAG
GTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGC
CAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGC
GGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGGCAGTGCG
CAGAGAGGCAGTGCGCAGACTCATTCATTCCCAGAGAGTAACAAAGGAAA
ATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCA
CGCTCCGGTAGAATACTTACAAAAGGCATATCCTTTTCTACTTAAAACTT
TAAGTCAGTGGGGTTTACAGATAGCCACAGAAAAGGTCCAAATTTCTGAT
ACAGGACAATTCTTGGGCTCTGTGGTGTCCCCAGATAAGATTGTGCCCCA
AAAGGTAGAGATAAGAAGAGATCACCTCCTTACCTTAAATGATTTTTCAA
AGCTGTTGGGAGATATTAATTGGCTCAGACCTTTTTTAAAGATTCCTTCC
GCTGAGCTAAGGCCCTTGTTTTACTATTTTTAATGGATACCCTCATAATC
TCTTCCCCTGATTACCTTTTACTCCTAGCTTGCTAACACCATCTTTACTT
TATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_k18.b1 MSMg01no345_k18.b1 CHROMAT_FILE:
MSMg01no345_k18.b1 PHD_FILE: MSMg01no345_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:10 2005
         (480 letters)



>mm_chr7_6809320_6810199
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 474/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtggactccacagagtaatggttcagtcatggtatgcacctcaaagcccaggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtggactccacagagtaatggttcagtcatggtatgcacctcaaagcccaggt 264

                                                                       
Query: 65  ttgtatagactatcccaccaggcttgagtaagttcactctaatgtggtgcatctgtcaag 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 ttgtatagactatcccaccaggcttgagtaagttcactctaatgtggtacatctgtcaag 324

                                                                       
Query: 125 cttcctccaggaaggctctcctagtaagccaaggccaagctttattcatcttcccctcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcctccaggaaggctctcctagtaagccaaggccaagctttattcatcttcccctcta 384

                                                                       
Query: 185 aataaaaactgggtggaaacagatttccttaaaagaatcaaccagggagggcaacattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataaaaactgggtggaaacagatttccttaaaagaatcaaccagggagggcaacattct 444

                                                                       
Query: 245 gcagactctcatttctagaacatgttaatttgacgagctttgtagataaagttggagata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagactctcatttctagaacatgttaatttgacgagctttgtagataaagttggagata 504

                                                                       
Query: 305 actctttgtttatatgtgtacatatttgtgtgtctgtgcatgactgtgtggagtatgtgc 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actctttgtttatatgtgcacatatttgtgtgtctgtgcatgactgtgtggagtatgtgc 564

                                                                       
Query: 365 atacatacaatacccaagggacctagaagtatcagatcctttggagctagagttacagat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atacatacaatacccaagggacctagaagtatcagatcctttggagctagagttacagat 624

                                                                   
Query: 425 ggttttgagttgcctaatatggatgctacgaacctgacttaggtcctctgtaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggttttgagttgcctaatatggatgctacgaacctgacttaggtcctctgtaagga 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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