BAC Information

Click to search

BAC

Clone NameMSMg01-345N03
Chromosome7 (Build37)
Map Location 16,612,364 - 16,612,715
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
Downstream geneZfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345N03.T7 (MSMg01no345_n03.b1)MSMg01-345N03.TJ (MSMg01no345_n03.g1)
ACCAG458553AG458554
length753762
length of high quality
(start - end)		583 (54 - 636)334 (87 - 420)
definitionCHROMAT_FILE: MSMg01no345_n03.b1 PHD_FILE: MSMg01no345_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:21 2005CHROMAT_FILE: MSMg01no345_n03.g1 PHD_FILE: MSMg01no345_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCATTAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGA
AAAAAATGTTCAACATCCTTAATCATCAAGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACTTCACTTTAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGTCCCAATCAGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
GCCCAAATGCCCCTCCACAGAGGAATGGATACATAAAATGTGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCC
TAGGCATAAAATAGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
CCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATT
AGCCCAGAAACTTANGATACCCCAGATATAAGATACAATTTGCTAAACTC
ATGAAATTCCAGAAGAAAGAAGACCAAAGGGTGGGACACTTTGCCTCTTC
TTN

TAACTAACGATGCGTAGGNTAGCGCGTGGGGCCGGGCGTGGCTCXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCCAACCTGGACTAAGGA
CATAAATAAAGTGGTACCTTACATCTTGGCTGAGGAAGGACGGAGGCCAG
AGAGGCAAGAAGGGAGGAACGAGTGACAGATGAAGACAGAGAACAAAGCC
AGGGGCAGGTCAGTGAGCACAATAAAGATGATACCTCGGCCAGACTCATA
CCAGTAATCCCCAGGGCAGAACTTCTGATAACTAACATTGGGAATGGTCT
GAGGTTTTTTTTTTTTCCCTTTATATTTATTTTGTGTATATGAGTACACT
GTACTGTCTTCAGACACACCAGAAGAGGACATCAGATCCCACTACAGATG
GTTGTTAAGTGGACATGAGGTCCTAACTGAGTCTGTTCTTTGAGAAGAAT
ATATCAGACAACCTAGGAGAGAAAATGTGGGAGTCACAGAGGGTGATAAG
CAAAAACTCCTTCCTTGGCTGTTCCTCGAGGATTCCTCCATTTGAGGACC
CTTCGCAGGTCTGGCCTTGCCTGCTTCCCATCAAACTATTTGCCCAAAGT
GGACTCTGCCCTTGGCTCTTTGCCGTCTGGATCTAACCCATCCTGGAGCT
TCCCCTTTCCCTCCCCCCAACCCCCACCTCTGTTTTTTTCTTACATTTTT
CTTTAGCTCTTCCCCTATACGTGTCCCTTTCCCAAACCCCCCTTCTCCTA
CCTCCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_n03.g1 MSMg01no345_n03.g1 CHROMAT_FILE:
MSMg01no345_n03.g1 PHD_FILE: MSMg01no345_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:21 2005
         (334 letters)



>mm_chr7_16612164_16612898
          Length = 735

 Score =  470 bits (243), Expect = e-137
 Identities = 320/355 (90%), Gaps = 24/355 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctggactaaggacataaataaagtggtaccttacatcttggctgaggaaggacggagg 60
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 201 acctggactaaggacataaataaagtggtaccttacgtcttggctgaggaaggatggagg 260

                                                                       
Query: 61  ccagagaggcaagaaggg-aggaacgagtgacagatgaagacagagaacaaagccagggg 119
           |||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| ||||
Sbjct: 261 ccagaggggcaagaagggcaagaatgagtgacagatgaagacagagaacaaagcc-gggg 319

                                                                       
Query: 120 caggtcagtgagcacaataaagatgatacctcggccagactcataccagtaatccccagg 179
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caggccagtgagtacaataaagatgatacctcggccagactcataccagtaatccccagg 379

                                                                       
Query: 180 gca-gaa-cttctgataactaa-----------cattgggaatggtctgaggtt-ttttt 225
           | | ||| ||||||||||||||           ||||||||||||||||| ||| || ||
Sbjct: 380 g-aggaaccttctgataactaatataatgacctcattgggaatggtctga-gttcttctt 437

                                                                       
Query: 226 tttttccctttatatttattttgtgtatatgagtacactgtactgtcttcagacacacca 285
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 438 tttttccctttatatttattttgtgtatatgagtacactgtactgttttcagacacacca 497

                                                                  
Query: 286 gaagaggacatcagatcccactacagatggttgtta----agt--ggacatgagg 334
           |||||||||||||||||||| ||||||||||||| |    |||  ||||||||||
Sbjct: 498 gaagaggacatcagatcccattacagatggttgtgagtggagtaaggacatgagg 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 735
Length adjustment: 9
Effective length of query: 325
Effective length of database: 726
Effective search space:   235950
Effective search space used:   235950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |