BAC Information

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BAC

Clone NameMSMg01-347E22
Chromosome7 (Build37)
Map Location 141,479,838 - 141,595,031
singlet/doubletdoublet
Overlap gene4933400E14Rik
Upstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik
Downstream geneLOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347E22.T7 (MSMg01no347_e22.b1)MSMg01-347E22.TJ (MSMg01no347_e22.g1)
ACCAG459680AG459681
length802777
length of high quality
(start - end)		371 (71 - 441)427 (80 - 506)
definitionCHROMAT_FILE: MSMg01no347_e22.b1 PHD_FILE: MSMg01no347_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:14 2005CHROMAT_FILE: MSMg01no347_e22.g1 PHD_FILE: MSMg01no347_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,594,661 - 141,595,031)(141,479,838 - 141,480,264)
sequence
NCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGC
GGAATTCCCACCAAGTTCTCGTGGGTTTGACTAATGTTAGCAAATGCTTA
GAAATGCATTCCTGACTCGCTCGCTGAGAGGAACAGCTCTGGGTAAAGTC
ATGTAAAATGTCCTGAGTTGGCCTGCTGGAGTGGATTCCCCCACAGTTCA
CTCTCTCGGTGTGACAGTATTAGTCCACAGAGCCTAGCGGAATACATTGG
GGTTTGAGGTGGGATCTCAAGGATGGAGCTTTGCCTTTCTCACTGATGAG
TCCTCATGCATGAACTGCTGTAATTGTCTCCACAAGAACAGGCTGATGTG
AGACAAGGCAGCTCTCCAAGCTTTCTCCAGCAGCATGCATCTGCTCCTTT
CATCCTACATCAAGCATTGAAGCATCACAATTTCCCTACCTGCACCATGC
CCTGGGATGCCCCAGTCTCAAACCATGAGCGCAAATCAACCTTCTGTTCT
TTTATGATTTCCCTAAACTTTGGGTATTCTATTACAACACAAAGGAAGTT
GTATCCAATCCCCCTAAAGAGAAAGGAGAGTCTCTTTGGTTGATTGGGTT
TAAGGTTTTTTGTTTTTTGGGTTTTTTGGTTTTTTTTTCTTTCCTTCCCC
CCTTCCCCTTTTTTTTCCTCCCACTTTTCCTTTCCTAATTTTTTTTATCC
CCCTTTCCTTTATATTTTCCGTCTTCTCCCTTATTTTTTCCTTTCTTTTT
TCTCCATCCTTCCCTCCATTTTCTCTTTTATTCCCTCTTCCTTTTATTTC
TT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTCTCTACTGGTCCGTGA
TTTGGAAGGCTCTGACTTGGCTCACCTTGGGAGGTGTGGATAACCCAATT
CAGATGAAGTCCATCTGATCTGTGAGATACAGCGGGGAGGCTGGTGAGCC
ATGTGAGCCATGTGATCACCCATGCTTCCCGTCTGGGTACAGTCCCCCAG
CACTCTGACAAGTGGGAGATGTGTAAGTAAATAAGAACCCCAATTTTGCA
AATAGCAATGGGAGCATTGAAGAAGGAGAGGCTTAGGGAAGCAGATGCGT
CGGGTGGATTTTTCTGCATGCCTAAGGATGAGATGCACAACTTAATTGAA
TTAGATGTGGAAGGAGGAGAGTATGGGGAAGGAGCTAAAGTAGCAGCCAG
GCCATGTGGCTATGTCGGGTCCCTGCCAGGTCGAGGCTTAACACCATGAT
AAGAGTAAAGACACATGTTTAAGAAAGAACTGGGTGGTAAAGCAATAGCC
TCTACACACTCCAGGCCTCCTGGTCAGGGTAAGAATTTACAGGTAACTGT
TTAAAAAGGCTGGACTGTAAGCCATTTCTGCTGTTTTATTTAATTGTTTA
GTTTTCCCCTTCCCACTTTTCATTTTATGTGCCTTTTTCTTTCTTCCCTC
CTTTATATCATTCTTCCCCTTCTCCCAATTCTCGCTTTTTTCCCCTCGCT
CCTTTTTTTCCCCCCTTTTTACTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_e22.b1 MSMg01no347_e22.b1 CHROMAT_FILE:
MSMg01no347_e22.b1 PHD_FILE: MSMg01no347_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:14 2005
         (371 letters)



>mm_chr7_141594461_141595231
          Length = 771

 Score =  687 bits (355), Expect = 0.0
 Identities = 367/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgggtttgactaatgttagcaaatgcttagaaatgcattcctgactcgctcgctgagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtgggtttgactaatgttagcaaatgcttagaaatgcattcctgactcgctcgctgagag 512

                                                                       
Query: 61  gaacagctctgggtaaagtcatgtaaaatgtcctgagttggcctgctggagtggattccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaacagctctgggtaaagtcatgtaaaatgtcctgagttggcctgctggagtggattccc 452

                                                                       
Query: 121 ccacagttcactctctcggtgtgacagtattagtccacagagcctagcggaatacattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccacagttcactctctcggtgtgacagtattagtccacagagcctagcggaatacattgg 392

                                                                       
Query: 181 ggtttgaggtgggatctcaaggatggagctttgcctttctcactgatgagtcctcatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtttgaggtgggatctcaaggatggagctttgcctttctcactgatgagtcctcatgca 332

                                                                       
Query: 241 tgaactgctgtaattgtctccacaagaacaggctgatgtgagacaaggcagctctccaag 300
           ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |
Sbjct: 331 tgaactgctgtaattgtctccacaagagcaggctgacgtgagacaaggcagccctccacg 272

                                                                       
Query: 301 ctttctccagcagcatgcatctgctcctttcatcctacatcaagcattgaagcatcacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctttctccagcagcatgcatctgctcctttcatcctacatcaagcattgaagcatcacaa 212

                      
Query: 361 tttccctacct 371
           |||||||||||
Sbjct: 211 tttccctacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_e22.g1 MSMg01no347_e22.g1 CHROMAT_FILE:
MSMg01no347_e22.g1 PHD_FILE: MSMg01no347_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:14 2005
         (427 letters)



>mm_chr7_141479638_141480464
          Length = 827

 Score =  795 bits (411), Expect = 0.0
 Identities = 423/427 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtctctactggtccgtgatttggaaggctctgacttggctcaccttgggaggtgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtctctactggtccgtgatttggaaggctctgacttggctcaccttgggaggtgtgg 260

                                                                       
Query: 61  ataacccaattcagatgaagtccatctgatctgtgagatacagcggggaggctggtgagc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ataactcaattcagatgaagtccatctgatctgtgagatacagcggggacgctggtgagc 320

                                                                       
Query: 121 catgtgagccatgtgatcacccatgcttcccgtctgggtacagtcccccagcactctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtgagccatgtgatcacccatgcttcccgtctgggtacagtcccccagcactctgac 380

                                                                       
Query: 181 aagtgggagatgtgtaagtaaataagaaccccaattttgcaaatagcaatgggagcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgggagatgtgtaagtaaataagaaccccaattttgcaaatagcaatgggagcattg 440

                                                                       
Query: 241 aagaaggagaggcttagggaagcagatgcgtcgggtggatttttctgcatgcctaaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaggagaggcttagggaagcagatgcgtcgggtggatttttctgcatgcctaaggat 500

                                                                       
Query: 301 gagatgcacaacttaattgaattagatgtggaaggaggagagtatggggaaggagctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatgcacaacttaattgaattagatgtggaaggaggagagtatggggaaggagctaaa 560

                                                                       
Query: 361 gtagcagccaggccatgtggctatgtcgggtccctgccaggtcgaggcttaacaccatga 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gtagcagtcaggccatgtggctatgtcgggtccctgccaggtcgaggcttaacaccaaga 620

                  
Query: 421 taagagt 427
           |||||||
Sbjct: 621 taagagt 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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