Query= MSMg01no347_j14.b1 MSMg01no347_j14.b1 CHROMAT_FILE:
MSMg01no347_j14.b1 PHD_FILE: MSMg01no347_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:37 2005
(344 letters)
>mm_chr7_134238910_134239655
Length = 746
Score = 534 bits (276), Expect = e-156
Identities = 314/334 (94%), Gaps = 16/334 (4%)
Strand = Plus / Plus
Query: 20 ggaattctaagtctt---gctaagcttgtatgttgagacagacattccttacttaagctt 76
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggaattctaagtc--aaagctaagcttgtatgttgagacagacattccttacttaagctt 277
Query: 77 tgtaattaggggctgtgggctcagctttgtcaggactggatcagagggagactactaaga 136
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgtaattaggggctgtgagctcagctttgtcaggactggatcagagggagactactaaga 337
Query: 137 tcaagattgagggcactctaatttggatttttttttttttt-gagaaaaactacatttat 195
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 338 ccaagcttgagggcactctaatttggatttttttttttttttgagaaaaactacatttat 397
Query: 196 tctcctagacctatgaaggccataggtgtgagaacaggggttgctgaattttccaggcag 255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 398 tctcctagacctatgaaggccataggtgtgagaacaggggttgctgaatttttcaggcag 457
Query: 256 tcccccaaacaagcccaaaccggcagggttgacaga-----ttttgtcttctgcttttga 310
|||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 458 tcccccaaacaagcccaaaccggcagggttgacagaaaacgtttt-----ctgcttttga 512
Query: 311 aagtttttgtttttagtacttcccaagtgactta 344
||||||||||||||||||||||||||||||||||
Sbjct: 513 aagtttttgtttttagtacttcccaagtgactta 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 746
Length adjustment: 9
Effective length of query: 335
Effective length of database: 737
Effective search space: 246895
Effective search space used: 246895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_j14.g1 MSMg01no347_j14.g1 CHROMAT_FILE:
MSMg01no347_j14.g1 PHD_FILE: MSMg01no347_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:37 2005
(483 letters)
>mm_chr7_134416034_134416916
Length = 883
Score = 919 bits (475), Expect = 0.0
Identities = 481/483 (99%)
Strand = Plus / Minus
Query: 1 ataatgcctgatagtgccgtggtaggagatgtgctggtattaaccaaacctttaggaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ataatgcctgatagtgccgtggtaggagatgtgctggtattaaccaaacctttaggaacc 624
Query: 61 caggttgctgccaatgcccaccaatggctggataatcctgagaaatggaataaaatcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caggttgctgccaatgcccaccaatggctggataatcctgagaaatggaataaaatcaag 564
Query: 121 atggtggtttccagagaggaagtagagttagcctatcaggaagctatgttcaatatggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atggtggtttccagagaggaagtagagttagcctatcaggaagctatgttcaatatggct 504
Query: 181 actctaaacaggactgctgctggcttgatgcacacttttaatgcccacgcagccacggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 actctaaacaggactgctgctggcttgatgcacacttttaatgcccacgcagccacggat 444
Query: 241 atcacaggctttggcatattaggacactctcagaacctggcaaaacagcaaaaaaatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcacaggctttggcatattaggacactctcagaacctggcaaaacagcaaaaaaatgaa 384
Query: 301 gtgtcctttgtcatacataatctgccaataattgccaagatggctgcgatcagcaaagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgtcctttgtcatacataatctgccaataattgccaagatggctgcgatcagcaaagcc 324
Query: 361 agtgggcgctttggcctcctccaaggaacgtcagctgaaacctctgggggattactgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtgggcgctttggcctcctccaaggaacgtcagctgaaacctctgggggattactgatt 264
Query: 421 tgtctgccaagagaacaggcggtccgcttttgttcggaaatcaaatcttccaagtacgga 480
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtctgccaagagagcaggcggcccgcttttgttcggaaatcaaatcttccaagtacgga 204
Query: 481 gag 483
|||
Sbjct: 203 gag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
