BAC Information

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BAC

Clone NameMSMg01-347J24
Chromosome7 (Build37)
Map Location 90,753,331 - 90,753,674
singlet/doubletsinglet
Overlap geneTmc3
Upstream geneAdamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
Downstream geneStard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347J24.T7 (MSMg01no347_j24.b1)MSMg01-347J24.TJ (MSMg01no347_j24.g1)
ACCAG459921AG459922
length795753
length of high quality
(start - end)		344 (74 - 417)403 (77 - 479)
definitionCHROMAT_FILE: MSMg01no347_j24.b1 PHD_FILE: MSMg01no347_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:39 2005CHROMAT_FILE: MSMg01no347_j24.g1 PHD_FILE: MSMg01no347_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATCATGATGCAAACAAGACATGTATTCCATCATCTTGCTGC
TCATTTCCTGTCTGCTTTCCCTCTTCCCCTCTGCCCCTCATCCTCTTCTT
TCTCTGCTTCCTCTTTCCTCTACCTATAATTCCAGCTGTATTACTGGTAC
TATTCTATTCCCTCCTGCTCTGACTCTGCTCCTTCCATTCCTACTGCTGC
CAGCTTTCCTTGAGCAATCTCCCTAGGGGAAGCTCTCTTCTACATGTGGG
GAAGCAGCAGCATGCCTTAGCTCTGCAGTGATTCAGTCCCTCTGTGGATG
GCTGATGGGTGAACCACCTTGGGGCTCTTCCCACCAGGATGCTCTACCTT
GCTAACTGGAAGCGCAGGGTCGTCCGNGGATGATACATCTCCAAGGCAGC
GATGAGGTCATAGGCAGACGGTGCTAGCATGGTGACGAGGGAGACCCCAC
GCTTACCTATGGAGAGAGTATAGGCTTCTTCAAGTCCCCCCCTCTGTTCT
CTCAACCACATTTGTTTTTGGATTTGGCCCACTGTCCATTGGAATTGTCT
TAAACAAGAATCCGAGCCCCTACTTTAAACCCCCCCCTTTTTCCCCTTAT
TTATCCCCCTTTTCTTTCACCCCCCCTTCTCCTTTAATTTTCTTTTTTTT
AATTTCCCCACTTCCTGGTGTAAAATTATTTGGCTTCTCGTTTTTGGTCC
TTTTTTCCTTTTCCCCTCCCCTTCTCTTTTAATTACAACTCTTTT

NTCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATATTGGATATTAGTCC
TCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTC
ATGAAGTCCCATTTGTCAATTCTCGATCTTATAGCACAAGCCACAAGGGG
TGGATTGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGA
ACTACAATCCAGAATTGGAAGGCTCACCAGTGACCCTTATCTAGAGGCTT
GGAGATCCTTATCTGGATCTTGGTTTGGAGATCTTGAGCCATAGTGGCTA
TGGATTCCAGAAGATTGAATCTCCGAGTTTAAGGAACACACCTTTAATCT
GGGCTACACCTTTCATCTGGGATTAAAGGTGTGGTGTATCATACCTTTAA
TCTGGGCGACCCCTTCTGCTGTAGACTATATAAGGACATTGGAATTAATT
TTGTCTATTTCTTGCTCTTGTTCCTTCTCCTGCTTGATGCGCTAGAATGA
CTATTTGTTCCACTCTTTTCCCTCCCCTTCCCTTTTTCTTTGTCCCCTCT
TGGTAATTGATTTTCTTTTTTTACTCATCCACACCTCCCCTTTTTTTTTT
TCCTCTTCCCTTTTTTTTTCCGTTTTCCCTTACCCCCCCTTTTCTCCCCT
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_j24.b1 MSMg01no347_j24.b1 CHROMAT_FILE:
MSMg01no347_j24.b1 PHD_FILE: MSMg01no347_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:39 2005
         (344 letters)



>mm_chr7_90753131_90753874
          Length = 744

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacatgtattccatcatcttgctgctcatttcctgtctgctttccctcttcccctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagacatgtattccatcatcttgctgctcatttcctgtctgctttccctcttcccctctg 485

                                                                       
Query: 61  cccctcatcctcttctttctctgcttcctctttcctctacctataattccagctgtatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cccctcatcctcttctttctctgcttcctctttcctctacctataattccagctgtatta 425

                                                                       
Query: 121 ctggtactattctattccctcctgctctgactctgctccttccattcctactgctgccag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 424 ctggtactattctattccctcctgctctgactccgctccttccattcctactgctgccag 365

                                                                       
Query: 181 ctttccttgagcaatctccctaggggaagctctcttctacatgtggggaagcagcagcat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctttccttgagcagtctccctaggggaagctctcttctacatgtggggaagcagcagcat 305

                                                                       
Query: 241 gccttagctctgcagtgattcagtccctctgtggatggctgatgggtgaaccaccttggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gccttagctctgcagtgattcagtccctctgtggatggctgatgggtgaaccaccttggg 245

                                                       
Query: 301 gctcttcccaccaggatgctctaccttgctaactggaagcgcag 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gctcttcccaccaggatgctctaccttgctaactggaagcgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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