Query= MSMg01no347_n20.b1 MSMg01no347_n20.b1 CHROMAT_FILE:
MSMg01no347_n20.b1 PHD_FILE: MSMg01no347_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:58 2005
(409 letters)
>mm_chr7_136421720_136422528
Length = 809
Score = 650 bits (336), Expect = 0.0
Identities = 375/390 (96%), Gaps = 7/390 (1%)
Strand = Plus / Plus
Query: 11 gaattcctggctc---tttagggtaacgacctcacccaagagcacattcccaggaagtga 67
||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 gaattcctggctcaaat--agggtaacgacctcacccaagagcacactcccaggaagtga 268
Query: 68 gatggacagtgtttggcaagaaatttgaaagcaaatgttttctaagttgggacaatttac 127
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gatggccagtgcttggcaagaaatttgaaagcaaatgttttctaagttgggacaatttac 328
Query: 128 acgagattcgagattgagcagaagaagaagaggtgagtcaggcttgaggctttctgataa 187
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 329 acgagattcgagattgggcagaagaaaaagaggtgagtcaggcttgaggctttctgataa 388
Query: 188 tgaagtggccctggtgaccttaggggagccatgggcatgaaaaagatggatatgttctga 247
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 tgaagtggccctggtgacctcaggggagccatgggcatgaaaa-gatggatatgttctga 447
Query: 248 gcaaatgcagccttgacattcccagatagtgctaggacaaattatctcatgcccaatgtg 307
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gcaaatgtagccttgacattcccagatagtgctaggacaaattatctcatgcccaatgtg 507
Query: 308 caagctaaaagagaccttgagtaagtatcctgcatctttttattttaaattttctttgta 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caagctaaaagagaccttgagtaagtatcctgcatctttttattttaaattttctttgta 567
Query: 368 ttt-attattactattattattattattat 396
||| ||||||| ||||||||||||||||||
Sbjct: 568 ttttattattattattattattattattat 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no347_n20.g1 MSMg01no347_n20.g1 CHROMAT_FILE:
MSMg01no347_n20.g1 PHD_FILE: MSMg01no347_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:58 2005
(369 letters)
>mm_chr7_136603406_136604173
Length = 768
Score = 659 bits (341), Expect = 0.0
Identities = 362/369 (98%), Gaps = 1/369 (0%)
Strand = Plus / Minus
Query: 1 atcagaagaaaggggaggagccagggtaacagtaggggaaaggactaagattcattacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 atcagaagaaaggggaggagccagggtaacagtaggggaaaggactaagattcattacta 509
Query: 61 atatgcgtagagctggtttattagttctagccagactctagtctacagcttttggtactt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atatgcatagagctggtttattagttctagccagactctagtctacagcttttggtactt 449
Query: 121 ctccacagctgcctggcacgtttagccttggacatgaattcatgtccagaaaggagttcc 180
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctccacaactgcttggcacttttagccttggacatgaattcatgtccagaaaggagttcc 389
Query: 181 ttccgggatccttgtagcctcttacaggtgtacacatccaataaatatctataacccact 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttctgggatccttgtagcctcttacaggtgtacacatccaataaatatctataacccact 329
Query: 241 gggagagtgagcaggagcttgaagcctttggggtctggatctgtcattcacaatgttcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gggagagtgagcaggagcttgaagcctttggggtctggatctgtcattcacaatgttcat 269
Query: 301 ttgttgtgaaagccatgaaggaatcaaataaccaacaactgtgaaataactaacaaagac 360
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgttg-gaaaaccatgaaggaatcaaataaccaacaactgtgaaataactaacaaagac 210
Query: 361 acctggata 369
|||||||||
Sbjct: 209 acctggata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 768
Length adjustment: 9
Effective length of query: 360
Effective length of database: 759
Effective search space: 273240
Effective search space used: 273240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
