BAC Information

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BAC

Clone NameMSMg01-347P19
Chromosome7 (Build37)
Map Location 29,179,821 - 29,180,162
singlet/doubletsinglet
Overlap genePaf1
Upstream geneSpnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl
Downstream geneSamd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347P19.T7 (MSMg01no347_p19.b1)MSMg01-347P19.TJ (MSMg01no347_p19.g1)
ACCAG460195AG460196
length762724
length of high quality
(start - end)		555 (46 - 600)522 (83 - 604)
definitionCHROMAT_FILE: MSMg01no347_p19.b1 PHD_FILE: MSMg01no347_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:08 2005CHROMAT_FILE: MSMg01no347_p19.g1 PHD_FILE: MSMg01no347_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGCCCATGCTCTTGCTCAAGGACGTTCTAGGACTGTTGGAACA
CTGGTGAAGGCTTAGCTATGTCAGAATTCAATCTTAAAGGGCACTTATAA
TAAGATAATACTAAAAGAGAGCACGTGGATCCATACGCCAGACTAACGCG
GGATTGGAATATGTGTATATGAGTTAAAGAGAACGCCAGACTCTAGGAGG
TGAGTTTCCATGAAACTCTTTGCCTCGTGAGTGGCTTCCAGGCCTCTCGG
CCTGTCAAGCTGACTTGACCGGAGTGTGTGGCACCAGAGAAGGTGGGCAG
CGCCCGGAGAGGAACCAATGCGCATATTGCAAGGAAATGGGCCACTGGAA
GAGCGACTGTCTGAATAAAAAACAAGAGGTGAAGGTGATTTCTCTTGGAG
AAGATGAAGACTAGGGGGAACGGGGCTCGGCCTCCCCTCCCCGAGCCTAG
GGTAACCTTAGAAGTGGAGGGGACCCCCATGGACTTTCTATTCGACACGG
GAGCCGACTCTTCAGTACTCAAAACACCTCTAGAAAAAGTGAAGTAAAAC
GAAAAAAGTCTTGGTGATCCGGGCCACAGGACAAAAATCGTATCCATGGA
ACACNNCCCGAGTAGTAGACATAGGGCGAAACCGAGNNNCCCNNTTCCTT
TTCAGTCCTTCCAGAGTGTCCTATGCCTCTATTGGTGAAAAGATTACCTA
CCTAGGTTTACG

TATTTATTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTACCTGTTCTGGT
CGAAGGGGTAGGTGATGAACTTGGGGTCAAATGGGATGTCAGGAAGGCTA
TTGCAGTACTTGACTCGGCAGACTACTCCAGACCTAAGAAAACAGAGGCC
CAGAACTAGGTCTTGCAGACCTATAGAAATAACTTCAGCAGTTAAGAGGG
AGTATTTATTCTGCAGAGGACCCAAGTTTGGTTCCTAGCACCCACATCAG
GCTGCTGACAATCACCTGTAACAAGGGGAACCTGACACCTGTGACCTCTG
TAGGCAGCTACACAAACATGTACATACTTACACATCTAATTAAAAACATA
AATGGCTTAAGTTGGTGGCACAGGCCTTTAATCCCTGCACTTGGGAGACA
GGCAAATCACTTGAGAGTTTAAGCTAGTGATGGTTTACATAGTGAGTTCC
AGACCAGTCAGTGATACAAAGTGAAACTCTTGTCTCAAAAGAATTAATAG
TACCCACACTTTAATACCAGCCTTGGGGAGGCAGAGGCAGTGGATCTCTG
AGTTTGAAGCCAGTCTGCTCTACAGAGTGAGCGAGTGAGTTCCAGGACAG
CCCGAGCTACACAGAGAAACTCGGTCTTGAAAAAAGATAGAGTAGTAGTA
TTAATTTTTAAAAACCGGTTCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_p19.g1 MSMg01no347_p19.g1 CHROMAT_FILE:
MSMg01no347_p19.g1 PHD_FILE: MSMg01no347_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:08 2005
         (522 letters)



>mm_chr7_29179821_29180742
          Length = 922

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctacctgttctggtcgaaggggtaggtgatgaacttggggtcaaatgggatgtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtcctacctgttctggtcgaaggggtaggtgatgaacttggggtcaaatgggatgtcag 283

                                                                       
Query: 61  gaaggctattgcagtacttgactcggcagactactccagacctaagaaaacagaggccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaggctattgcagtacttgactcggcagactactccagacctaagaaaacagaggccca 223

                                                                       
Query: 121 gaactaggtcttgcagacctatagaaataacttcagcagttaagagggagtatttattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaactaggtcttgcagacctatagaaataacttcagcagttaagagggagtatttattct 163

                                                                       
Query: 181 gcagaggacccaagtttggttcctagcacccacatcaggctgctgacaatcacctgtaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 162 gcagaggacccaagtttggttcctagcacccacatcaggctgctgacaaccacctgtaac 103

                                                                       
Query: 241 aaggggaacctgacacctgtgacctctgtaggcagctacacaaacatgtacatacttaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aaggggaacctgacacctgtgacctctgtaggcagctacacaaacatgtacatacttaca 43

                                                     
Query: 301 catctaattaaaaacataaatggcttaagttggtggcacagg 342
           |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 42  catctaattaaaaatataaatggcttaagttggtggcacagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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