BAC Information

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BAC

Clone NameMSMg01-348M12
Chromosome7 (Build37)
Map Location 102,618,122 - 102,618,639
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666816, LOC100040132, LOC666823
Downstream geneFrda-ps, EG666836, Odz4, LOC670727, LOC666858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348M12.T7 (MSMg01no348_m12.b1)MSMg01-348M12.TJ (MSMg01no348_m12.g1)
ACCAG460796AG460797
length725943
length of high quality
(start - end)
605 (39 - 643)---
definitionCHROMAT_FILE: MSMg01no348_m12.b1 PHD_FILE: MSMg01no348_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:12 2005CHROMAT_FILE: MSMg01no348_m12.g1 PHD_FILE: MSMg01no348_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GATTTCCACAAGGAAGGAGGAGCTGGGAGTGTTCCTGAGGCTTCCCCTCC
AGCAGTCTCCAGTGGGCATCTTGATGAAGCCTGAGGACTTGAGTAGACCC
CAGATGCCTCAGGGAGCTATAGTTGTAGCTTCCAATGCTATGAGTCCCAG
CTGCTCAGAAACCCCCCTACCTGCTTCGTGACAATGTCTACCATGTGAGA
AGGGGAGCCAGCATTTAGCAAGTCCCAACAGCTGTCAAATGCAGTCTGGG
TGACTTATATAAGCTTTGCAACAAACCTTGGAGCAGGCAGAATTTTTGAC
ATTTCACATTAGTTGAATTTCTGTTGTGTGACAGATGTGTCTTATACTTC
ATCTCAATCTTTACAGTAATCCTGGAAAAAGACATAATTGTACACTTTGC
GTGGAAAAGTATGGTTTGGAGAGATGCAGTAAGTGCTAGGAGTCCCTCAA
GCAGGCAGTAGTTAGGACAAAATTAAAAACTCACTCTATTTGACTCCTGG
ATGCAAAACAAACTAGCCTCCAAGACCTCAGAGCTCCAAGGATGGAGTCT
ATGCATGTATTTATATGCATATCCTGCTTGACTTATTTTCATGTCCTTCT
AAGGAAAGAACTAGATGCTATCCCCATATACTAACAGAATTCTGCCTTCC
CAGCCTTAGCTACCANGATTTGAGN
ATAGAGGGAAATACGGGCGGGCGCCTTGTCCCGTCGCACTTTACGTGACA
CTATAGATACGACCCGCGGTAATTCATCCCCGTATCCCTGAATATAGATG
GAACGTCGTTCTCACAAGACTTTGAAATGTCTTATTGTATTTCTGCACAC
TCCCCCAATTATGGCCCATCAACTGATTAATCAACGACACACGGACCCGA
GAGATCGCTCCATACTCTACAAACAGAGCAACTTTCCGTTCTTGTTCCTA
CAAGCGCCATCAACCTTTTTCAGACACACATGGAATGTTATAGACTTATT
GCCCCTCTCAACACATGATTGTCCATTTTCCCATGTCACCCAATACTGTA
ACTTGCCCCACACTCCCCCAGCGCACCTGTCAGCCTGAGGTGCCCATTGA
GGCTATGTATAACCCCCCTTTGTAATTTGCCTTCCCCCCCCTTTTCTTTT
CTCCCCCGCCAGTATTAATATTAATAACTATTTCGGCGCCGCCCCCGCGT
CATCTCTGTCGACCCCCGCGCTTAAGACGTTCACCCTTATTACCCCTGAT
TGCACCTATGCGCCATTTCTGCCGTTTACAATAAACCCCTTAATTCTTTT
AATTATTTATAAAAACACATATCCAACCCCACCTCCCAACCACATTTCGT
GTTTTTATCACATATCTTTTCCCTATCCACTGTCCCTCACCGTATTATTA
TTATTTTTTTCATGTCGGGCGCTCGCGCCCCCGCTGTTACAACGCCCCCG
CTTCATGTTCTCTTTACGAATTGTAGATCGCTCTCTATCCCTTCTTCCCC
CATCCCCCTACCCATTCCTTTTCCCCGCCCCCGCTTTTCATATATAACTG
GATATGATATACCTATTCAACGCCTTCTATCAGCTGATCACCAACACCTA
TAATACATGACACTCCCCGCGTATCTATCCGTCATATATGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_m12.b1 MSMg01no348_m12.b1 CHROMAT_FILE:
MSMg01no348_m12.b1 PHD_FILE: MSMg01no348_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:12 2005
         (605 letters)



>mm_chr7_102618122_102619126
          Length = 1005

 Score =  917 bits (474), Expect = 0.0
 Identities = 507/518 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggatttccacaaggaaggaggagctgggagtgttcctgaggcttcccctcca 63
           |||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 518 ggaattcaggaagcccacaaggaaggaggagcagggagtgttcctgaggcttcccctcca 459

                                                                       
Query: 64  gcagtctccagtgggcatcttgatgaagcctgaggacttgagtagaccccagatgcctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gcagtctccagtgggcatcttgatgaagcctgaggacttgagtagaccccagatgcctca 399

                                                                       
Query: 124 gggagctatagttgtagcttccaatgctatgagtcccagctgctcagaaacccccctacc 183
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 398 gggagctacagttgtagcttccaatgctatgagtcccagctgctcagaaaaccccctacc 339

                                                                       
Query: 184 tgcttcgtgacaatgtctaccatgtgagaaggggagccagcatttagcaagtcccaacag 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcttcgtgacaatgtctaccaggtgagaaggggagccagcatttagcaagtcccaacag 279

                                                                       
Query: 244 ctgtcaaatgcagtctgggtgacttatataagctttgcaacaaaccttggagcaggcaga 303
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgtcaaatgcagtctgggtgatttatataagctttgcaacaaaccttggagcaggcaga 219

                                                                       
Query: 304 atttttgacatttcacattagttgaatttctgttgtgtgacagatgtgtcttatacttca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atttttgacatttcacattagttgaatttctgttgtgtgacagatgtgtcttatacttca 159

                                                                       
Query: 364 tctcaatctttacagtaatcctggaaaaagacataattgtacactttgcgtggaaaagta 423
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 158 tctcaatctttacagtaatcctggaaaaagacataattgtatactttgcgtggaaaagta 99

                                                                       
Query: 424 tggtttggagagatgcagtaagtgctaggagtccctcaagcaggcagtagttaggacaaa 483
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 98  tggtttggagagatgcagtaagtgctaggagtctctcaagcaggcagtagttaggacaaa 39

                                                 
Query: 484 attaaaaactcactctatttgactcctggatgcaaaac 521
           |||||||||||||||||||||||||||| |||||||||
Sbjct: 38  attaaaaactcactctatttgactcctgaatgcaaaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)