BAC Information

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BAC

Clone NameMSMg01-349I05
Chromosome7 (Build37)
Map Location 148,288,999 - 148,289,425
singlet/doubletsinglet
Overlap geneTrp53i5
Upstream geneEchs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr
Downstream genePtdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349I05.T7 (MSMg01no349_i05.b1)MSMg01-349I05.TJ (MSMg01no349_i05.g1)
ACCAG461350AG461351
length733760
length of high quality
(start - end)		454 (70 - 523)427 (76 - 502)
definitionCHROMAT_FILE: MSMg01no349_i05.b1 PHD_FILE: MSMg01no349_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:08 2005CHROMAT_FILE: MSMg01no349_i05.g1 PHD_FILE: MSMg01no349_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGCCTCTTCACGAGCAATCAGGGCTCTTAACCACAGAGCCATC
TCTTCAGCCTGCGTGGTCCTCTCTTTAATGGCACTTCTTAACAATTATAG
TCTCAGACAGGTGGTGTGGCACATACCTTTCATCTCAGGATTCAGGACGC
AGAAGCAGGCAATCTCTGTGGGTTCAATGTCAGCCTGGTCTAAAGAGGCA
GTTCCAGAAGAGCCAGGGCTATCCAGAGAAAACTTGTCTTGAAAAGCCAA
AATCAAACAACCACAACAACAACTTACAATCACAGCTTCTCTTCCCTAAG
TGCATCAGGCTTCTCAGTGTTTCCGCACAAACCGCATGTTTTGTAATTAC
TTTTGCCCACTTGCTCTTTTCCACGGTTGACCTGCATAAGCGCTATCAGT
AACAACCGTGCACAGGTGCAATATTATCTTGTCTCAAAATTTTCCTCCAG
AAAATTAAGGCCATTGCTTCAAAATTTAACCTCAGACAAGTTCTTATGAC
CTGAGTAGAGAAGGCATCTAGATTCCTTTTTTGCCCAAAATATCGTATAT
ATGTTTTTTGCCCAGCTGGCAACATTTGTTCCCCTTTGAAATCTCCTGAG
CTGTGCCTCTATCAACTAAAATGGGCCTCTATAATGTTCCCATAACTTCA
CCAAGGGTTCTGACTTAGAATGGTTTCTTTTAA

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGGGTGGGGTCCAGGAGATA
AACAACCAGTAGAAAAGTTCCAGGAAGAAGGTGGGGATGGGGAAGCCTGA
GTCCTTTACCAATCTCGTCTGGGAGAAGAGGGTGCAACCATACTATGTCT
GCCTTAGCTGGGGATTTCCCAGCAGATAACTTAGCTCCTCCCATGGCTGC
GCTGGGGTCACGAACAGAGATAACACGAGGCTCCTGGACCAGTTAGGCTC
CAAGCTTTTAGGGCAGAAGACTACCAATGTTTAGGACTGGCTGCTTCATT
CCACTGCTGTCATTCAGGGACCTGGCTGCAGGTGCTAGAGACCATTGGAG
TGCTGGCAGTCATTGCCAATGGAATGGTCATCGCCTTCACCTCTGAGTTC
ATCCCCAGGGTAGTCTACAAGTACCACTATGGCCCGTGCCGAACGAATCG
GACCTTCTCAGATGAGTAAGGCTTTGAACTAACCCTTCCAGTTAAGTCCT
TGGAGCCCAGACCTGGGGCTCTCCTGGTGTTATAGTGTTGCTTGCCGTAC
CTACTAGGGTCTGCACCGAGGTCGTGACTTGACTCTTTGTACTGTCTACC
TGGTCTGCTCACCTTGGCTGCATTCCTGTTTTTTATTGACGCACCCTTTG
TCCGCCCGTATTTCCGCTTCTTTTCCCTCTTTTATCTCCCTTTCCTCTCT
GCTTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_i05.g1 MSMg01no349_i05.g1 CHROMAT_FILE:
MSMg01no349_i05.g1 PHD_FILE: MSMg01no349_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:08 2005
         (427 letters)



>mm_chr7_148288799_148289625
          Length = 827

 Score =  774 bits (400), Expect = 0.0
 Identities = 421/428 (98%), Gaps = 2/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttgggtggggtccaggagataaacaaccagtagaaaagttccaggaagaaggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcacttgggtggggtccaggagataaacaaccagtagaaaagttccaggaagaaggtggg 568

                                                                       
Query: 61  gatggggaagcctgagtcctttaccaatctc-gtctgggagaagagggtgcaaccatact 119
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 567 gatggggaagcctgagtcctttaccaatc-cagtctgggagaagagggtgcaaccatact 509

                                                                       
Query: 120 atgtctgccttagctggggatttcccagcagataacttagctcctcccatggctgcgctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atgtctgccttagctggggatttcccagcagataacttagctcctcccatggctgcgctg 449

                                                                       
Query: 180 gggtcacgaacagagataacacgaggctcctggaccagttaggctccaagcttttagggc 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gggtcacaaacagagataacacgaggctcctggaccagttaggctccaagcttttagggc 389

                                                                       
Query: 240 agaagactaccaatgtttaggactggctgcttcattccactgctgtcattcagggacctg 299
           ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 388 agaagactaccaatgatcaggactggctgcttcattccacttctgtcattcagggacctg 329

                                                                       
Query: 300 gctgcaggtgctagagaccattggagtgctggcagtcattgccaatggaatggtcatcgc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 328 gctgcaggtgctagagaccattggagtgctggcagtcattgccaatggaatggttatcgc 269

                                                                       
Query: 360 cttcacctctgagttcatccccagggtagtctacaagtaccactatggcccgtgccgaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttcacctctgagttcatccccagggtagtctacaagtaccactatggcccgtgccgaac 209

                   
Query: 420 gaatcgga 427
           ||||||||
Sbjct: 208 gaatcgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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