BAC Information

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BAC

Clone NameMSMg01-349J06
Chromosome7 (Build37)
Map Location 102,046,561 - 102,107,694
singlet/doubletdoublet
Overlap geneLOC100040132
Upstream geneEG545982, EG666816
Downstream geneLOC666823, Frda-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349J06.T7 (MSMg01no349_j06.b1)MSMg01-349J06.TJ (MSMg01no349_j06.g1)
ACCAG461400AG461401
length755768
length of high quality
(start - end)		563 (39 - 601)491 (75 - 565)
definitionCHROMAT_FILE: MSMg01no349_j06.b1 PHD_FILE: MSMg01no349_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:13 2005CHROMAT_FILE: MSMg01no349_j06.g1 PHD_FILE: MSMg01no349_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,107,136 - 102,107,694)(102,046,561 - 102,047,051)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
TGATTAAATAAAATGTCAAAAATATAATGTTAGAGTCTCAACAGACACCA
GACTCCTGATCTCTCAGGAAGTCAAGGTTTCCTTCTTTCATTTCAGGTTT
GCCTGTTTTTGGTTTCCTAGGTCCTTATTAATTCTATTTTACTGAAATAG
TTTGTGTACTTACTAGTGTTACCAAACATGATATTTAAAACTTTTATAGT
CTTTCACTGACACACCTTACAGCATTTTTGAAACAACATTACTAGTGATG
CAGAATGGAATACCCTGCCTAGACAATGTGACACCTTTCAGGTTGGAGAG
AAAAATATAACCTTCAGGGTAGCTCCCATGCTTAGGATTACCCCACCACC
CAGATTGTACTCTTCTTGTTCTGTGCACTTTCATAACTATGCTAAGGAAT
GTACACTACTCTCATTGTTTCTTGCTGCCACAAGGAGAGATTACATCTTG
GTCCCAGAGAAAGAAGTTATCATGAAGACTAAAGGGAAGCCAACATAACT
TTATGGACTTCATAAGACTTGAAAGGGGGACAGATAACTAAACTCTTCCA
TATTTTAAAGGACCCTTAGTGTGTATAGAGTCTTCTTCATATCTCTGAAA
ATAATATCATCTTAAGCCAGACTTCCATTTCTCAATAATATGGACAGTCT
TAGAAACCCTTTCGATGATTCTGTTATGAATTGGAACAACAATTGGGAGT
TGGTG

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGCATTCTTTTAAGGTTTTGCCTCC
ATAAATCAGTATGGCTCAATCTAGCATTAGATGATAAAATACCCATTGTA
GGTGATTATTTTTCATTCTTTGTTATTTCCAAAATGCCTTTGGCTGCACT
TCAATGGGTAGATGCTTGGCATATAGTATATTTTTGGAGTTGAGCCAAGA
ATGGAACTAGATCAACGAAAGATTAGGACTTCCCTGTGAGATGGGTCACA
GCCTTTCCCACATTCTCTGTATAGCTTCTGAAACAAGGAAAGTATCCAGG
CTGGAGGCTCTGCTGATGAGACGGTGTTGGCAGCATTTCCCTCTAAGCTA
GAAACTAGAAGAAAAGACTGCCTGACCAGCTGCCATCCACAACTTAGAAA
ACTTGAATATTTAAGCAATTATAGGTTTCCCATGGCGTTCCCAATGCTCT
TTTCAAGTGTAACACTTAAAAAAGAAAATCAGGCAAACAAAAGGCTCATG
AAAAAAACTCAGTGCTGAAACTCCACCTCACAAAAAGAANAAGAAAATGA
ANGAANANAGAANGAATAANNAAAGAAANAGAAAAGATCCGCNGAACAAC
TTGTCTGTACCTATTTTCTTCCACAAACTTCCATGATACTTTGGAGCCAC
TGCTGCTGGGAATTCCTGAAGATGGGAAGTTATTGGAGGAAACCTGGATT
ACTCCCCAAATCTTGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_j06.b1 MSMg01no349_j06.b1 CHROMAT_FILE:
MSMg01no349_j06.b1 PHD_FILE: MSMg01no349_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:13 2005
         (563 letters)



>mm_chr7_102106932_102107894
          Length = 963

 Score = 1035 bits (535), Expect = 0.0
 Identities = 553/559 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgattaaataaaatgtcaaaaatataatgttagagtctcaacagacaccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattctgtgattaaataaaatgtcaaaaatataatgttagagtctcaacagacaccaga 704

                                                                       
Query: 65  ctcctgatctctcaggaagtcaaggtttccttctttcatttcaggtttgcctgtttttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctcctgatctctcaggaagtcaaggtttccttctttcatttcaggtttgcctgtttttgg 644

                                                                       
Query: 125 tttcctaggtccttattaattctattttactgaaatagtttgtgtacttactagtgttac 184
           |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 643 tttcctaggtccttattaattctattttcctgaagtagtttgtgtacttactagcgttac 584

                                                                       
Query: 185 caaacatgatatttaaaacttttatagtctttcactgacacaccttacagcatttttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caaacatgatatttaaaacttttatagtctttcactgacacaccttacagcatttttgaa 524

                                                                       
Query: 245 acaacattactagtgatgcagaatggaataccctgcctagacaatgtgacacctttcagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 acaacattactagtgatgcagaatggaataccctgcctagacaatgtgacacctttcagg 464

                                                                       
Query: 305 ttggagagaaaaatataaccttcagggtagctcccatgcttaggattaccccaccaccca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttggagagaaaaatataaccttcagggtagctcccatgcttaggattaccccaccaccca 404

                                                                       
Query: 365 gattgtactcttcttgttctgtgcactttcataactatgctaaggaatgtacactactct 424
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 403 gattgtactcctcttgttctgtgcactttcatgactatgctaaggaatgtacactactct 344

                                                                       
Query: 425 cattgtttcttgctgccacaaggagagattacatcttggtcccagagaaagaagttatca 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 343 cattgtttcttgctgccacaaggagagattacaccttggtcccagagaaagaagttatca 284

                                                                       
Query: 485 tgaagactaaagggaagccaacataactttatggacttcataagacttgaaagggggaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgaagactaaagggaagccaacataactttatggacttcataagacttgaaagggggaca 224

                              
Query: 545 gataactaaactcttccat 563
           |||||||||||||||||||
Sbjct: 223 gataactaaactcttccat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no349_j06.g1 MSMg01no349_j06.g1 CHROMAT_FILE:
MSMg01no349_j06.g1 PHD_FILE: MSMg01no349_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:14 2005
         (491 letters)



>mm_chr7_102046361_102047251
          Length = 891

 Score =  949 bits (491), Expect = 0.0
 Identities = 491/491 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcattcttttaaggttttgcctccataaatcagtatggctcaatctagcattagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcattcttttaaggttttgcctccataaatcagtatggctcaatctagcattagatga 260

                                                                       
Query: 61  taaaatacccattgtaggtgattatttttcattctttgttatttccaaaatgcctttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaatacccattgtaggtgattatttttcattctttgttatttccaaaatgcctttggc 320

                                                                       
Query: 121 tgcacttcaatgggtagatgcttggcatatagtatatttttggagttgagccaagaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacttcaatgggtagatgcttggcatatagtatatttttggagttgagccaagaatgg 380

                                                                       
Query: 181 aactagatcaacgaaagattaggacttccctgtgagatgggtcacagcctttcccacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactagatcaacgaaagattaggacttccctgtgagatgggtcacagcctttcccacatt 440

                                                                       
Query: 241 ctctgtatagcttctgaaacaaggaaagtatccaggctggaggctctgctgatgagacgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgtatagcttctgaaacaaggaaagtatccaggctggaggctctgctgatgagacgg 500

                                                                       
Query: 301 tgttggcagcatttccctctaagctagaaactagaagaaaagactgcctgaccagctgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttggcagcatttccctctaagctagaaactagaagaaaagactgcctgaccagctgcc 560

                                                                       
Query: 361 atccacaacttagaaaacttgaatatttaagcaattataggtttcccatggcgttcccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccacaacttagaaaacttgaatatttaagcaattataggtttcccatggcgttcccaa 620

                                                                       
Query: 421 tgctcttttcaagtgtaacacttaaaaaagaaaatcaggcaaacaaaaggctcatgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctcttttcaagtgtaacacttaaaaaagaaaatcaggcaaacaaaaggctcatgaaaa 680

                      
Query: 481 aaactcagtgc 491
           |||||||||||
Sbjct: 681 aaactcagtgc 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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